High Performance Database Searching with HMMer on FPGAs. - Timothy F. Oliver; Leow Yuan Yeow; Bertil Schmidt (IPDPS, 2007)

MPI-HMMER-Boost: Distributed FPGA Acceleration. - John Paul Walters; Xiandong Meng; Vipin Chaudhary; Timothy F. Oliver; Leow Yuan Yeow; Bertil Schmidt; Darran Nathan; Joseph I. Landman (J. VLSI Signal Process., 2007)

Integrating FPGA acceleration into HMMer. - Timothy F. Oliver; Leow Yuan Yeow; Bertil Schmidt (Parallel Comput., 2008)