Robustness, Stability and Efficiency of Phage lambda Genetic Switch: Dynamical Structure Analysis. - Xiaomei Zhu; Lan Yin; Leroy Hood; Ping Ao (J. Bioinform. Comput. Biol., 2004)

MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis. - Daehee Hwang; Ning Zhang; Hookeun Lee; Eugene Yi; Hui Zhang; Inyoul Y. Lee; Leroy Hood; Ruedi Aebersold (Bioinform., 2008)

The Prion Disease Database: a comprehensive transcriptome resource for systems biology research in prion diseases. - Nils Gehlenborg; Daehee Hwang; Inyoul Y. Lee; Hyuntae Yoo; David Baxter; Brianne Petritis; Rose Pitstick; Bruz Marzolf; Stephen J. DeArmond; George Carlson; Leroy Hood (Database J. Biol. Databases Curation, 2009)

Prequips - an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data. - Nils Gehlenborg; Wei Yan; Inyoul Y. Lee; Hyuntae Yoo; Kay Nieselt; Daehee Hwang; Ruedi Aebersold; Leroy Hood (Bioinform., 2009)

WaveletQuant, an improved quantification software based on wavelet signal threshold de-noising for labeled quantitative proteomic analysis. - Fan Mo; Qun Mo; Yuanyuan Chen; David R. Goodlett; Leroy Hood; Gilbert S. Omenn; Song Li; Biaoyang Lin (BMC Bioinform., 2010)

Principal network analysis: identification of subnetworks representing major dynamics using gene expression data. - Yongsoo Kim; Taek-Kyun Kim; Yungu Kim; Jiho Yoo; Sungyong You; Inyoul Y. Lee; George Carlson; Leroy Hood; Seungjin Choi; Daehee Hwang (Bioinform., 2011)

Systems Approaches to Biology and Disease Enable Translational Systems Medicine. - Leroy Hood; Qiang Tian (Genom. Proteom. Bioinform., 2012)

From Phage lambda to human cancer: endogenous molecular-cellular network hypothesis. - Gaowei Wang; Xiaomei Zhu; Leroy Hood; Ping Ao (Quant. Biol., 2013)

iNetModels 2.0: an interactive visualization and database of multi-omics data. - Muhammad Arif 007; Cheng Zhang 002; Xiangyu Li; Cem Güngör; Bugra Çakmak; Metin Arslantürk; Abdellah Tebani; Berkay Özcan; Oguzhan Subas; Wenyu Zhou; Brian Piening; Hasan Turkez; et al. (Nucleic Acids Res., 2021)

A framework towards digital twins for type 2 diabetes. - Yue Zhang 024; Guangrong Qin; Boris Aguilar; Noa Rappaport; James T. Yurkovich; Lance Pflieger; Sui Huang; Leroy Hood; Ilya Shmulevich (Frontiers Digit. Health, 2024)