A benchmark for Affymetrix GeneChip expression measures. - Leslie Cope; Rafael A. Irizarry; Harris A. Jaffee; Zhijin Wu; Terence P. Speed (Bioinform., 2004)

affy - analysis of Affymetrix GeneChip data at the probe level. - Laurent Gautier; Leslie Cope; Benjamin M. Bolstad; Rafael A. Irizarry (Bioinform., 2004)

Pre-processing Agilent microarray data. - Marianna Zahurak; Giovanni Parmigiani; Wayne Yu; Robert B. Scharpf; David Berman; Edward M. Schaeffer; Shabana Shabbeer; Leslie Cope (BMC Bioinform., 2007)

Identifying differential correlation in gene/pathway combinations. - Rosemary Braun; Leslie Cope; Giovanni Parmigiani (BMC Bioinform., 2008)

The ordering of expression among a few genes can provide simple cancer biomarkers and signal BRCA1 mutations. - Xue Lin; Bahman Afsari; Luigi Marchionni; Leslie Cope; Giovanni Parmigiani; Daniel Q. Naiman; Donald Geman (BMC Bioinform., 2009)

Exploring Massive, Genome Scale Datasets with the GenometriCorr Package. - Alexander V. Favorov; Loris Mularoni; Leslie M. Cope; Yulia A. Medvedeva; Andrey A. Mironov; Vsevolod J. Makeev; Sarah J. Wheelan (PLoS Comput. Biol., 2012)

Integrative correlation: Properties and relation to canonical correlations. - Leslie Cope; Daniel Q. Naiman; Giovanni Parmigiani (J. Multivar. Anal., 2014)

A multi-omic analysis of human naïve CD4+ T cells. - Christopher J. Mitchell; Derese Getnet; Min Sik Kim; Srinivas Manda Srikanth; Praveen Kumar; Tai-Chung Huang; Sneha M. Pinto; Nirujogi Raja Sekhar; Mio Iwasaki; Patrick G. Shaw; Xinyan Wu; Jun Zhong; et al. (BMC Syst. Biol., 2015)

AGA: Interactive pipeline for reproducible genomics analyses. - Michael Considine; Hilary S. Parker; Yingying Wei; Xaio Xia; Leslie Cope; Michael F. Ochs; Elana J. Fertig (F1000Research, 2015)

Advanced machine learning informatics modeling using clinical and radiological imaging metrics for characterizing breast tumor characteristics with the OncotypeDX gene array. - Michael A. Jacobs; Christopher Umbricht; Vishwa S. Parekh; Riham El Khouli; Leslie Cope; Katarzyna J. Macura; Susan C. Harvey; Antonio C. Wolff (CoRR, 2018)

Measuring DNA Copy Number Variation Using High-Density Methylation Microarrays. - Soonweng Cho; Hyun-Seok Kim; Martha A. Zeiger; Christopher Umbricht; Leslie M. Cope (J. Comput. Biol., 2019)

Jutils: a visualization toolkit for differential alternative splicing events. - Guangyu Yang; Leslie Cope; Zitong He; Liliana Florea (Bioinform., 2021)

Regression Expression Variation Analysis (REVA): a rank-based multi-dimensional measure of correlation. - Bahman Afsari; Alexander V. Favorov; Elana J. Fertig; Leslie Cope (ICMLA, 2022)