Geometrical Analysis of Structural Changes in Immunoglobulin Domains' Transition From Native to Molten State. - Irena Roterman; Leszek Konieczny (Comput. Chem., 1995)

Congo Red Bound to -1-Proteinase Inhibitor As a Model of Supramolecular Ligand and Protein Complex. - Irena Roterman; Janina Rybarska; Leszek Konieczny; Marek Skowronek; Barbara Stopa; Barbara Piekarska; Grzegorz Bakalarski (Comput. Chem., 1998)

The Conformational Characteristics of Congo Red, Evans Blue and Trypan Blue. - Marek Skowronek; Irena Roterman; Leszek Konieczny; Barbara Stopa; Janina Rybarska; Barbara Piekarska; Andrzej Górecki; Marek Król (Comput. Chem., 2000)

Why do Congo Red, Evans Blue, and Trypan Blue differ in their complexation properties? - Marek Skowronek; Irena Roterman; Leszek Konieczny; Barbara Stopa; Janina Rybarska; Barbara Piekarska (J. Comput. Chem., 2000)

Search for structural similarity in proteins. - Jacek Leluk; Leszek Konieczny; Irena Roterman (Bioinform., 2003)

Limited conformational space for early-stage protein folding simulation. - Michal Brylinski; Wiktor Jurkowski; Leszek Konieczny; Irena Roterman (Bioinform., 2004)

SPI - Structure predictability index for protein sequences. - Michal Brylinski; Leszek Konieczny; Irena Roterman (Silico Biol., 2004)

Force-field parametrization and molecular dynamics simulations of Congo red. - Marcin Król; Tomasz Borowski; Irena Roterman; Barbara Piekarska; Barbara Stopa; Joanna Rybarska; Leszek Konieczny (J. Comput. Aided Mol. Des., 2004)

How specially adapted chromatographic bed material might be used for the controlled formation of immune complexes and studies of congo red binding to bivalent antibodies. - Anna Drozd; Leszek Konieczny; Barbara Piekarska; Janina Rybarska; Barbara Stopa; Grzegorz Zemanek (Bio Algorithms Med Syst., 2006)

Specific supramolecular ligands with proteins. Possible practical application. - Joanna Grabska-Chrzastowska; Anna Drozd; Leszek Konieczny; Janina Rybarska; Barbara Stopa; Barbara Piekarska; Irena Roterman; Marcin Król; Pawel Spólnik; Grzegorz Zemanek (Bio Algorithms Med Syst., 2006)

Protein complexes with supramolecular ligands formed and revealed in two-dimensional electrophoresis. The search for computer analysis of results. - Joanna Rybarska; Pawel Spólnik; Anna Drozd; Leszek Konieczny; Barbara Piekarska; Barbara Stopa; Grzegorz Zemanek; Marcin Król; Irena Roterman-Konieczna (Bio Algorithms Med Syst., 2006)

Hydrophobic collapse in (in silico) protein folding. - Michal Brylinski; Leszek Konieczny; Irena Roterman (Comput. Biol. Chem., 2006)

Sequence-Structure-Function Relation Characterized in silico. - Michal Brylinski; Marek Kochanczyk; Leszek Konieczny; Irena Roterman (Silico Biol., 2006)

Gauss-Function-Based Model of Hydrophobicity Density in Proteins. - Leszek Konieczny; Michal Brylinski; Irena Roterman (Silico Biol., 2006)

Is the protein folding an aim-oriented process? Human haemoglobin as example. - Michal Brylinski; Leszek Konieczny; Irena Roterman (Int. J. Bioinform. Res. Appl., 2007)

Prediction of Functional Sites Based on the Fuzzy Oil Drop Model. - Michal Brylinski; Katarzyna Prymula; Wiktor Jurkowski; Marek Kochanczyk; Ewa Stawowczyk; Leszek Konieczny; Irena Roterman (PLoS Comput. Biol., 2007)

The criterion of biological life in the developing robot era. - Pawel Spólnik; Leszek Konieczny (Bio Algorithms Med Syst., 2010)

The criteria of life and aging from a molecular viewpoint. The role of protein aggregation in the process of aging. - Pawel Spólnik; Leszek Konieczny; Barbara Piekarska; Janina Rybarska; Barbara Stopa; Grzegorz Zemanek (Bio Algorithms Med Syst., 2011)

Stability of Two Natural Homologous Proteins with Different Folds. - Leszek Konieczny; Mateusz Banach; Irena Roterman (Bio Algorithms Med Syst., 2012)

Technical Solutions for Bio-Measurements. - Leszek Konieczny; Michal Markiewicz; Piotr Piwowar; Irena Roterman (Bio Algorithms Med Syst., 2012)

BIOLOGICAL CLOCK - Is the Need for a Clock a Common Issue for Cells and Computers? - Pawel Spólnik; Leszek Konieczny; Irena Roterman; Michal Markiewicz (Bio Algorithms Med Syst., 2012)

Structural role of exons in hemoglobin. - Monika Piwowar; Mateusz Banach; Leszek Konieczny; Jacques Chomilier; Irena Roterman (Bio Algorithms Med Syst., 2013)

Structural role of exon-coded fragments in proteins. - Monika Piwowar; Mateusz Banach; Leszek Konieczny; Irena Roterman (Bio Algorithms Med Syst., 2013)

Attempt at a systemic outlook on aging and carcinogenesis. - Monika Piwowar; Jacek Dygut; Piotr Piwowar; Leszek Konieczny; Irena Roterman (Bio Algorithms Med Syst., 2014)

The use of Titan yellow dye as a metal ion binding marker for studies on the formation of specific complexes by supramolecular Congo red. - Katarzyna Chlopas; Anna Jagusiak; Leszek Konieczny; Barbara Piekarska; Irena Roterman; Janina Rybarska; Barbara Stopa; Grzegorz Zemanek; Elzbieta Bielanska; Piotr Piwowar; Krystyna Sadlik (Bio Algorithms Med Syst., 2015)

Hydrophobic core structure of macromomycin - the apoprotein of the antitumor antibiotic auromomycin - fuzzy oil drop model applied. - Irena Roterman-Konieczna; Mateusz Banach; Leszek Konieczny (Bio Algorithms Med Syst., 2015)

Application of Divergence Entropy to Characterize the Structure of the Hydrophobic Core in DNA Interacting Proteins. - Barbara Kalinowska; Mateusz Banach; Leszek Konieczny; Irena Roterman (Entropy, 2015)

Dissimilar sequence: similar structure of proteins. - Mateusz Banach; Leszek Konieczny; Irena Roterman (Bio Algorithms Med Syst., 2016)

Role of Disulfide Bonds in Stabilizing the Conformation of Selected Enzymes - An Approach Based on Divergence Entropy Applied to the Structure of Hydrophobic Core in Proteins. - Mateusz Banach; Barbara Kalinowska; Leszek Konieczny; Irena Roterman (Entropy, 2016)

Influence of the Aqueous Environment on Protein Structure - A Plausible Hypothesis Concerning the Mechanism of Amyloidogenesis. - Irena Roterman; Mateusz Banach; Barbara Kalinowska; Leszek Konieczny (Entropy, 2016)

Structure of hydrophobic core in plant carboxylesterase. - Mateusz Banach; Leszek Konieczny; Zdzislaw Wisniowski; Irena Roterman (Bio Algorithms Med Syst., 2017)

The variability of protein structure with respect to the hydrophobic core. - Mateusz Banach; Zdzislaw Wisniowski; Barbara Kalinowska; Leszek Konieczny; Irena Roterman (Bio Algorithms Med Syst., 2017)

Mechanism of ligand binding - PDZ domain taken as example. - Dawid Dulak; Mateusz Banach; Zdzislaw Wisniowski; Leszek Konieczny; Irena Roterman (Bio Algorithms Med Syst., 2017)

Role of the hydrophobic core in cytoskeleton protein: cardiac myosin binding protein C. - Maria Golda; Mateusz Banach; Zdzislaw Wisniowski; Wojciech Ziajka; Leszek Konieczny; Irena Roterman (Bio Algorithms Med Syst., 2017)

Chain-chain complexation and heme binding in haemoglobin with respect to the hydrophobic core structure. - Magdalena Ptak; Mateusz Banach; Zdzislaw Wisniowski; Leszek Konieczny; Irena Roterman (Bio Algorithms Med Syst., 2017)

Application of the Fuzzy Oil Drop Model Describes Amyloid as a Ribbonlike Micelle. - Irena Roterman; Mateusz Banach; Leszek Konieczny (Entropy, 2017)

Fragment Aβ(18-41) presented within the CDR3 loop region of a shark immunoglobulin new antigen receptor single-variable domain antibody analyzed based on the fuzzy oil drop model. - Mateusz Banach; Leszek Konieczny; Zdzislaw Wisniowski; Irena Roterman (Bio Algorithms Med Syst., 2018)

Chromatin 3D - will it make understanding of cancer transformation finally possible? - Grazyna Drabik; Jolanta Kaszuba-Zwoinska; Zdzislaw Wisniowski; Leszek Konieczny; Irena Roterman (Bio Algorithms Med Syst., 2018)

Comparison of the structure of Aβ(1-40) amyloid with the one in complex with polyphenol ε-viniferin glucoside (EVG). - Dawid Dulak; Mateusz Banach; Zdzislaw Wisniowski; Leszek Konieczny; Irena Roterman (Bio Algorithms Med Syst., 2018)

Personalized precision medicine. - Leszek Konieczny; Irena Roterman (Bio Algorithms Med Syst., 2019)

The living organism: evolutionary design or an accident. - Irena Roterman; Leszek Konieczny (Bio Algorithms Med Syst., 2019)

Structural analysis of the Aβ(11-42) amyloid fibril based on hydrophobicity distribution. - Irena Roterman; Dawid Dulak; Malgorzata Gadzala; Mateusz Banach; Leszek Konieczny (J. Comput. Aided Mol. Des., 2019)

Symmetry and Dissymmetry in Protein Structure - System-Coding Its Biological Specificity. - Mateusz Banach; Leszek Konieczny; Irena Roterman (Symmetry, 2019)

Protein folding vs. COVID-19 and the Mediterranean diet. - Irena Roterman; Leszek Konieczny (Bio Algorithms Med Syst., 2020)

System to simulate the activity of living organism - construction of proteome. - Krzysztof Mikuta; Leszek Konieczny; Irena Roterman (J. Comput. Sci., 2020)

The Status of Edge Strands in Ferredoxin-Like Fold. - Mateusz Banach; Piotr Fabian; Katarzyna Stapor; Leszek Konieczny; Magdalena Ptak-Kaczor; Irena Roterman (Symmetry, 2020)

Alternative Hydrophobic Core in Proteins - The Effect of Specific Synergy. - Piotr Fabian; Katarzyna Stapor; Mateusz Banach; Magdalena Ptak-Kaczor; Leszek Konieczny; Irena Roterman (Symmetry, 2020)

Divergence Entropy-Based Evaluation of Hydrophobic Core in Aggressive and Resistant Forms of Transthyretin. - Mateusz Banach; Katarzyna Stapor; Piotr Fabian; Leszek Konieczny; Irena Roterman (Entropy, 2021)

Protein Is an Intelligent Micelle. - Irena Roterman; Leszek Konieczny (Entropy, 2023)

Ab initio protein structure prediction: the necessary presence of external force field as it is delivered by Hsp40 chaperone. - Irena Roterman; Katarzyna Stapor; Leszek Konieczny (BMC Bioinform., 2023)

Role of environmental specificity in CASP results. - Irena Roterman; Katarzyna Stapor; Leszek Konieczny (BMC Bioinform., 2023)

The outer-membrane componentof the multi-drug efflux system -a structural analysis based onhydrophobicity distribution. - Irena Roterman; Leszek Konieczny; Katarzyna Stapor (Bio Algorithms Med Syst., 2024)