MaxSub: an automated measure for the assessment of protein structure prediction quality. - Naomi Siew; Arne Elofsson; Leszek Rychlewski; Daniel Fischer 001 (Bioinform., 2000)

From Fold to Function Predictions: An Apoptosis Regulator Protein BID. - Krzysztof Pawlowski; Leszek Rychlewski; John C. Reed; Adam Godzik (Comput. Chem., 2000)

Structure prediction meta server. - Janusz M. Bujnicki; Arne Elofsson; Daniel Fischer 001; Leszek Rychlewski (Bioinform., 2001)

ToolShop: prerelease inspections for protein structure prediction servers. - Leszek Rychlewski (Bioinform., 2001)

mRNA: guanine-N7 cap methyltransferases: identification of novel members of the family, evolutionary analysis, homology modeling, and analysis of sequence-structure-function relationships. - Janusz M. Bujnicki; Marcin Feder; Monika Radlinska; Leszek Rychlewski (BMC Bioinform., 2001)

A study of quality measures for protein threading models. - Susana Cristobal; Adam T. Zemla; Daniel Fischer 001; Leszek Rychlewski; Arne Elofsson (BMC Bioinform., 2001)

Fold-recognition detects an error in the Protein Data Bank. - Janusz M. Bujnicki; Leszek Rychlewski; Daniel Fischer 001 (Bioinform., 2002)

RNA: (guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited - bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure. - Janusz M. Bujnicki; Leszek Rychlewski (BMC Bioinform., 2002)

3D-Jury: A Simple Approach to Improve Protein Structure Predictions. - Krzysztof Ginalski; Arne Elofsson; Daniel Fischer 001; Leszek Rychlewski (Bioinform., 2003)

Ligand-Info, Searching for Similar Small Compounds Using Index Profiles. - Marcin von Grotthuss; Jakub Pas; Leszek Rychlewski (Bioinform., 2003)

ORFeus: detection of distant homology using sequence profiles and predicted secondary structure. - Krzysztof Ginalski; Jakub Pas; Lucjan Stanislaw Wyrwicz; Marcin von Grotthuss; Janusz M. Bujnicki; Leszek Rychlewski (Nucleic Acids Res., 2003)

Detection of reliable and unexpected protein fold predictions using 3D-Jury. - Krzysztof Ginalski; Leszek Rychlewski (Nucleic Acids Res., 2003)

ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins. - Pål Puntervoll; Rune Linding; Christine Gemünd; Sophie Chabanis-Davidson; Morten Mattingsdal; Scott Cameron; David M. A. Martin; Gabriele Ausiello; Barbara Brannetti; Anna Costantini; Fabrizio Ferrè; Vincenza Maselli; et al. (Nucleic Acids Res., 2003)

The PDB-Preview database: a repository of in-silico models of 'on-hold' PDB entries. - Daniel Fischer 001; Jakub Pas; Leszek Rychlewski (Bioinform., 2004)

Integrated web service for improving alignment quality based on segments comparison. - Dariusz Plewczynski; Leszek Rychlewski; Yuzhen Ye; Lukasz Jaroszewski; Adam Godzik (BMC Bioinform., 2004)

Detecting distant homology with Meta-BASIC. - Krzysztof Ginalski; Marcin von Grotthuss; Nick V. Grishin; Leszek Rychlewski (Nucleic Acids Res., 2004)

AutoMotif server: prediction of single residue post-translational modifications in proteins. - Dariusz Plewczynski; Adrian Tkacz; Lucjan Stanislaw Wyrwicz; Leszek Rychlewski (Bioinform., 2005)

FFAS03: a server for profile-profile sequence alignments. - Lukasz Jaroszewski; Leszek Rychlewski; Zhanwen Li; Weizhong Li 002; Adam Godzik (Nucleic Acids Res., 2005)

PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics. - Marcin von Grotthuss; Dariusz Plewczynski; Krzysztof Ginalski; Leszek Rychlewski; Eugene I. Shakhnovich (BMC Bioinform., 2006)

Three dimensional model of severe acute respiratory syndrome coronavirus helicase ATPase catalytic domain and molecular design of severe acute respiratory syndrome coronavirus helicase inhibitors. - Marcin Hoffmann; Krystian Eitner; Marcin von Grotthuss; Leszek Rychlewski; Ewa Banachowicz; Tomasz Grabarkiewicz; Tomasz Szkoda; Andrzej Kolinski (J. Comput. Aided Mol. Des., 2006)

TOM - Task and Object Management for Grid Clusters. - Lukasz Slabinski; Adam Godzik; Leszek Rychlewski (GCA, 2007)

XtalPred: a web server for prediction of protein crystallizability. - Lukasz Slabinski; Lukasz Jaroszewski; Leszek Rychlewski; Ian A. Wilson; Scott A. Lesley; Adam Godzik (Bioinform., 2007)

Evaluation of 3D-Jury on CASP7 models. - László Kaján; Leszek Rychlewski (BMC Bioinform., 2007)

eHiTS-to-VMD Interface Application. The Search for Tyrosine-tRNA Ligase Inhibitors. - Krystian Eitner; Tomasz Gaweda; Marcin Hoffmann; Miroslawa Jura; Leszek Rychlewski; Jan Barciszewski (J. Chem. Inf. Model., 2007)

3D-Fun: predicting enzyme function from structure. - Marcin von Grotthuss; Dariusz Plewczynski; Gert Vriend; Leszek Rychlewski (Nucleic Acids Res., 2008)

ELM: the status of the 2010 eukaryotic linear motif resource. - Cathryn M. Gould; Francesca Diella; Allegra Via; Pål Puntervoll; Christine Gemünd; Sophie Chabanis-Davidson; Sushama Michael; Ahmed Sayadi; Jan Christian Bryne; Claudia Chica; Markus Seiler; Norman E. Davey; et al. (Nucleic Acids Res., 2010)

VoteDock: Consensus docking method for prediction of protein-ligand interactions. - Dariusz Plewczynski; Michal Lazniewski; Marcin von Grotthuss; Leszek Rychlewski; Krzysztof Ginalski (J. Comput. Chem., 2011)

Detailed Mechanism of Squalene Epoxidase Inhibition by Terbinafine. - Marcin Nowosielski; Marcin Hoffmann; Lucjan Stanislaw Wyrwicz; Piotr Stepniak; Dariusz Plewczynski; Michal Lazniewski; Krzysztof Ginalski; Leszek Rychlewski (J. Chem. Inf. Model., 2011)

HarmonyDOCK: The Structural Analysis of Poses in Protein-Ligand Docking. - Dariusz Plewczynski; Anna Philips; Marcin von Grotthuss; Leszek Rychlewski; Krzysztof Ginalski (J. Comput. Biol., 2014)

3D-Hit: fast structural comparison of proteins on multicore architectures. - Lukasz Bieniasz-Krzywiec; Maciej Cytowski; Leszek Rychlewski; Dariusz Plewczynski (Optim. Lett., 2014)