CoCo: An application to store High-Throughput Sequencing data in compact text and binary file formats. - Kamil Khanipov; Georgiy Golovko; Mark Rojas; Levent Albayrak; Otto Dobretsberger; Maria Pimenova; Nels Olson; Sergei Chumakov; Yuriy Fofanov (BIBM, 2015)

Exploration of Natural Alignment Scoring Rules and Clustering Thresholds for Bacterial Core/Pan Genome Analysis. - Levent L. Albayrak; Kamil Khanipov; Mark Rojas; George Golovko; Maria Pimenova; Michael Kosoy; Yuriy Fofanov (BIBE, 2017)

Novel Computational Approach for Identification of Highly Mutated Integrated HIV Genomes. - Kamil Khanipov; Levent Albayrak; George Golovko; Maria Pimenova; Ioannis T. Pavlidis; Yuriy Fofanov; Khanipov K. (BIBE, 2017)

Detection of multi-dimensional co-exclusion patterns in microbial communities. - Levent Albayrak; Kamil Khanipov; George Golovko; Yuriy Fofanov (Bioinform., 2018)

Broom: application for non-redundant storage of high throughput sequencing data. - Levent Albayrak; Kamil Khanipov; George Golovko; Yuriy Fofanov (Bioinform., 2019)