Li Chen

Affiliations:
  • Johns Hopkins University School of Medicine, Department of Pathology, Baltimore, MD, USA
  • National Institutes of Health, National Cancer Institute, Pediatric Oncology Branch, Gaithersburg, MD, USA (former)
  • Virginia Tech, Blacksburg, VA, USA (PhD 2010)


According to our database1, Li Chen authored at least 26 papers between 2007 and 2015.

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Bibliography

2015
BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method.
Bioinform., 2015

2014
Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic.
Bioinform., 2014

Enhancing the convex analysis of mixtures technique for estimating DCE-MRI pharmacokinetic parameters.
Proceedings of the 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014

2013
The CAM software for nonnegative blind source separation in R-Java.
J. Mach. Learn. Res., 2013

2012
Integrative Network Analysis to Identify Aberrant Pathway Networks in Ovarian Cancer.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

Sampling-Based Subnetwork Identification from Microarray Data and Protein-Protein Interaction Network.
Proceedings of the 11th International Conference on Machine Learning and Applications, 2012

Detecting aberrant signal transduction pathways from high-throughput data using GIST algorithm.
Proceedings of the 2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2012

2011
Tissue-Specific Compartmental Analysis for Dynamic Contrast-Enhanced MR Imaging of Complex Tumors.
IEEE Trans. Medical Imaging, 2011

Identifying cancer biomarkers by network-constrained support vector machines.
BMC Syst. Biol., 2011

Motif-guided sparse decomposition of gene expression data for regulatory module identification.
BMC Bioinform., 2011

CAM-CM: a signal deconvolution tool for <i>in vivo</i> dynamic contrast-enhanced imaging of complex tissues.
Bioinform., 2011

2010
Integrative Modeling and Analysis of High-throughput Biological Data.
PhD thesis, 2010

Multilevel support vector regression analysis to identify condition-specific regulatory networks.
Bioinform., 2010

View reconstruction from images by removing vehicles.
Proceedings of the 2010 First International Workshop on Data Mining for Geoinformatics, 2010

2009
Biomarker identification by knowledge-driven multilevel ICA and motif analysis.
Int. J. Data Min. Bioinform., 2009

Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis.
Int. J. Comput. Biol. Drug Des., 2009

An algorithm for learning maximum entropy probability models of disease risk that efficiently searches and sparingly encodes multilocus genomic interactions.
Bioinform., 2009

2008
Motif-directed network component analysis for regulatory network inference.
BMC Bioinform., 2008

Knowledge-guided multi-scale independent component analysis for biomarker identification.
BMC Bioinform., 2008

Integrative Network Component Analysis for Regulatory Network Reconstruction.
Proceedings of the Bioinformatics Research and Applications, 2008

Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information.
Proceedings of the Bioinformatics Research and Applications, 2008

Convex analysis and separation of composite signals in DCE-MRI.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Network-Constrained Support Vector Machine for Classification.
Proceedings of the Seventh International Conference on Machine Learning and Applications, 2008

Identification of Condition-specific Regulatory Modules by Multi-level Motif and mRNA Expression Analysis.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

Reliability Analysis of Transcriptional Regulatory Networks.
Proceedings of the International Conference on Bioinformatics, 2008

2007
Biomarker Identification by Knowledge-Driven Multi-Level ICA and Motif Analysis.
Proceedings of the Sixth International Conference on Machine Learning and Applications, 2007


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