Biomarker Identification by Knowledge-Driven Multi-Level ICA and Motif Analysis. - Li Chen 018; Chen Wang 001; Ie-Ming Shih; Tian-Li Wang; Zhen Zhang; Yue Joseph Wang; Robert Clarke; Eric P. Hoffman; Jianhua Xuan (ICMLA, 2007)

Reliability Analysis of Transcriptional Regulatory Networks. - Chen Wang 001; Jianhua Xuan; Li Chen 018; Eric P. Hoffman; Robert Clarke (BCBGC, 2008)

Identification of Condition-specific Regulatory Modules by Multi-level Motif and mRNA Expression Analysis. - Li Chen 018; Jianhua Xuan; Rebecca B. Riggins; Yue Joseph Wang; Eric P. Hoffman; Robert Clarke (BIOCOMP, 2008)

Network-Constrained Support Vector Machine for Classification. - Li Chen 018; Jianhua Xuan; Yue Joseph Wang; Rebecca B. Riggins; Robert Clarke (ICMLA, 2008)

Convex analysis and separation of composite signals in DCE-MRI. - Li Chen 018; Tsung-Han Chan; Peter L. Choyke; Chong-Yung Chi; Ge Wang 001; Yue Joseph Wang (ISBI, 2008)

Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information. - Ting Gong; Jianhua Xuan; Li Chen 018; Rebecca B. Riggins; Yue Joseph Wang; Eric P. Hoffman; Robert Clarke (ISBRA, 2008)

Integrative Network Component Analysis for Regulatory Network Reconstruction. - Chen Wang 001; Jianhua Xuan; Li Chen 018; Po Zhao; Yue Joseph Wang; Robert Clarke; Eric P. Hoffman (ISBRA, 2008)

Knowledge-guided multi-scale independent component analysis for biomarker identification. - Li Chen 018; Jianhua Xuan; Chen Wang 001; Ie-Ming Shih; Yue Joseph Wang; Zhen Zhang; Eric P. Hoffman; Robert Clarke (BMC Bioinform., 2008)

Motif-directed network component analysis for regulatory network inference. - Chen Wang 001; Jianhua Xuan; Li Chen 018; Po Zhao; Yue Joseph Wang; Robert Clarke; Eric P. Hoffman (BMC Bioinform., 2008)

An algorithm for learning maximum entropy probability models of disease risk that efficiently searches and sparingly encodes multilocus genomic interactions. - David J. Miller 001; Yanxin Zhang; Guoqiang Yu; Yongmei Liu 003; Li Chen 018; Carl D. Langefeld; David M. Herrington; Yue Joseph Wang (Bioinform., 2009)

Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis. - Li Chen 018; Jianhua Xuan; Yue Joseph Wang; Eric P. Hoffman; Rebecca B. Riggins; Robert Clarke (Int. J. Comput. Biol. Drug Des., 2009)

Biomarker identification by knowledge-driven multilevel ICA and motif analysis. - Li Chen 018; Jianhua Xuan; Chen Wang 001; Yue Joseph Wang; Ie-Ming Shih; Tian-Li Wang; Zhen Zhang; Robert Clarke; Eric P. Hoffman (Int. J. Data Min. Bioinform., 2009)

View reconstruction from images by removing vehicles. - Li Chen 018; Lu Jin; Jing Dai; Jianhua Xuan (GIS-DMG, 2010)

Multilevel support vector regression analysis to identify condition-specific regulatory networks. - Li Chen 018; Jianhua Xuan; Rebecca B. Riggins; Yue Joseph Wang; Eric P. Hoffman; Robert Clarke (Bioinform., 2010)

Integrative Modeling and Analysis of High-throughput Biological Data. - Li Chen 018 (2010)

CAM-CM: a signal deconvolution tool for in vivo dynamic contrast-enhanced imaging of complex tissues. - Li Chen 018; Tsung-Han Chan; Peter L. Choyke; Elizabeth M. C. Hillman; Chong-Yung Chi; Zaver M. Bhujwalla; Ge Wang 001; Sean S. Wang; Zsolt Szabo; Yue Joseph Wang (Bioinform., 2011)

Motif-guided sparse decomposition of gene expression data for regulatory module identification. - Ting Gong; Jianhua Xuan; Li Chen 018; Rebecca B. Riggins; Huai Li; Eric P. Hoffman; Robert Clarke; Yue Joseph Wang (BMC Bioinform., 2011)

Identifying cancer biomarkers by network-constrained support vector machines. - Li Chen 018; Jianhua Xuan; Rebecca B. Riggins; Robert Clarke; Yue Joseph Wang (BMC Syst. Biol., 2011)

Tissue-Specific Compartmental Analysis for Dynamic Contrast-Enhanced MR Imaging of Complex Tumors. - Li Chen 018; Peter L. Choyke; Tsung-Han Chan; Chong-Yung Chi; Ge Wang 001; Yue Joseph Wang (IEEE Trans. Medical Imaging, 2011)

Detecting aberrant signal transduction pathways from high-throughput data using GIST algorithm. - Jinghua Gu; Jianhua Xuan; Chen Wang 001; Li Chen 018; Tian-Li Wang; Ie-Ming Shih (CIBCB, 2012)

Sampling-Based Subnetwork Identification from Microarray Data and Protein-Protein Interaction Network. - Xiao Wang 031; Jinghua Gu; Jianhua Xuan; Ayesha N. Shajahan; Robert Clarke; Li Chen 018 (ICMLA (2), 2012)

Integrative Network Analysis to Identify Aberrant Pathway Networks in Ovarian Cancer. - Li Chen 018; Jianhua Xuan; Jinghua Gu; Yue Wang 021; Zhen Zhang; Tian-Li Wang; Ie-Ming Shih (Pacific Symposium on Biocomputing, 2012)

The CAM software for nonnegative blind source separation in R-Java. - Niya Wang; Fan Meng; Li Chen 018; Subha Madhavan; Robert Clarke; Eric P. Hoffman; Jianhua Xuan; Yue Joseph Wang (J. Mach. Learn. Res., 2013)

Enhancing the convex analysis of mixtures technique for estimating DCE-MRI pharmacokinetic parameters. - Ibrahim Mohamed Ibrahim; Guoqiang Yu; Li Chen 018; Yue Wang 021 (EMBC, 2014)

Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic. - Jinghua Gu; Jianhua Xuan; Rebecca B. Riggins; Li Chen 018; Yue Joseph Wang; Robert Clarke (Bioinform., 2014)

BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method. - Xu Shi; Robert O. Barnes; Li Chen 018; Ayesha N. Shajahan-Haq; Leena Hilakivi-Clarke; Robert Clarke; Yue Joseph Wang; Jianhua Xuan (Bioinform., 2015)