Global Quantitative Mapping of Enhancers in Rice by STARR-seq. - Jialei Sun; Na He; Longjian Niu; Yingzhang Huang; Wei Shen; Yuedong Zhang; Li Li 057; Chunhui Hou (Genom. Proteom. Bioinform., 2019)

CharID: a two-step model for universal prediction of interactions between chromatin accessible regions. - Yin Shen; Quan Zhong; Tian Liu; Zi Wen; Wei Shen; Li Li 057 (Briefings Bioinform., 2022)

iEnhance: a multi-scale spatial projection encoding network for enhancing chromatin interaction data resolution. - Kai Li; Ping Zhang 027; Zilin Wang; Wei Shen; Weicheng Sun; Jinsheng Xu; Zi Wen; Li Li 057 (Briefings Bioinform., 2023)

PDA-PRGCN: identification of Piwi-interacting RNA-disease associations through subgraph projection and residual scaling-based feature augmentation. - Ping Zhang 027; Weicheng Sun; Dengguo Wei; Guodong Li; Jinsheng Xu; Zhuhong You; Bowei Zhao; Li Li 057 (BMC Bioinform., 2023)

COCOA: A Framework for Fine-scale Mapping of Cell-type-specific Chromatin Compartments Using Epigenomic Information. - Kai Li; Ping Zhang 027; Jinsheng Xu; Zi Wen; Junying Zhang; Zhike Zi; Li Li 057 (Genom. Proteom. Bioinform., 2025)