A probabilistic approach to sequence assembly validation. - Sun Kim; Li Liao; Jean-François Tomb (BIOKDD, 2001)

Clustering and Classifying Enzymes in Metabolic Pathways: Some Preliminary Results. - Sen Zhang 007; Li Liao; Jean-François Tomb; Jason Tsong-Li Wang (BIOKDD, 2002)

Combining pairwise sequence similarity and support vector machines for remote protein homology detection. - Li Liao; William Stafford Noble (RECOMB, 2002)

Combining Pairwise Sequence Similarity and Support Vector Machines for Detecting Remote Protein Evolutionary and Structural Relationships. - Li Liao; William Stafford Noble (J. Comput. Biol., 2003)

Automated support of quality improvement. - Li Liao; Hareton K. N. Leung; Yuzhong Qu (IASTED Conf. on Software Engineering and Applications, 2004)

An Improved Hidden Markov Model for Transmembrane Topology Prediction. - Robel Y. Kahsay; Li Liao; Guang R. Gao (ICTAI, 2004)

Using extended phylogenetc profiles and support vector machines for protein family classification. - Kishore Narra; Li Liao (SNPD, 2004)

Iterative weighting of phylogenetic profiles increases classification accuracy. - Roger A. Craig; Li Liao (ICMLA, 2005)

Discriminating transmembrane proteins from signal peptides using SVM-Fisher approach. - Li Liao; Robel Y. Kahsay; Guang R. Gao (ICMLA, 2005)

An improved hidden Markov model for transmembrane protein detection and topology prediction and its applications to complete genomes. - Robel Y. Kahsay; Guang R. Gao; Li Liao (Bioinform., 2005)

Quasi-consensus-based comparison of profile hidden Markov models for protein sequences. - Robel Y. Kahsay; Guoli Wang 005; Guang R. Gao; Li Liao; Roland L. Dunbrack Jr. (Bioinform., 2005)

Prediction of Antisense Oligonucleotide Efficacy Using Local and Global Structure Information with Support Vector Machines. - Roger A. Craig; Li Liao (ICMLA, 2006)

Information of Binding Sites Improves Prediction of Protein-Protein Interaction. - Tapan Patel; Manoj Pillay; Rahul Jawa; Li Liao (ICMLA, 2006)

Protein classification using transductive learning on phylogenetic profiles. - Roger A. Craig; Li Liao (SAC, 2006)

Predicting Protein-Protein Interaction Based on Fisher Scores Extracted from Domain Profiles. - Tapan Patel; Li Liao (BIBE, 2007)

Testing techniques for SOA model. - Li Liao; Hareton K. N. Leung (SEDE, 2007)

Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices. - Roger A. Craig; Li Liao (BMC Bioinform., 2007)

Transductive learning with EM algorithm to classify proteins based on phylogenetic profiles. - Roger A. Craig; Li Liao (Int. J. Data Min. Bioinform., 2007)

Correlation Between Gene Silencing Activity and Structural Features of Antisense Oligodeoxynucleotides and Target RNA. - Li Liao; Zhongwei Li (Silico Biol., 2007)

Inferring functional linkage from residue level co-evolution information. - Roger A. Craig; Keyur Malaviya; Krishna Balasubramanian; Li Liao (BIOCOMP, 2008)

SlopeMiner: An Improved Method for Mining Subtle Signals in Time Course Microarray Data. - Kevin McCormick; Roli Shrivastava; Li Liao (FAW, 2008)

Clustering exact matches of pairwise sequence alignments by weighted linear regression. - Alvaro J. González; Li Liao (BMC Bioinform., 2008)

Constrained Fisher Scores Derived from Interaction Profile Hidden Markov Models Improve Protein to Protein Interaction Prediction. - Alvaro J. González; Li Liao (BICoB, 2009)

Genomic Comparison of Bacterial Species Based on Metabolic Characteristics. - Gaurav Jain; Haozhu Wang; Li Liao; E. Fidelma Boyd (IJCBS, 2009)

Predicting ligand binding residues using multi-positional correlations and kernel canonical correlation analysis. - Alvaro J. González; Li Liao; Cathy H. Wu (BIBM, 2010)

Predicting Functional Sites in Biological Sequences Using Canonical Correlation Analysis. - Alvaro J. González; Li Liao; Cathy H. Wu (BIOCOMP, 2010)

Predicting domain-domain interaction based on domain profiles with feature selection and support vector machines. - Alvaro J. González; Li Liao (BMC Bioinform., 2010)

Prediction and Evaluation of miRNA - Target Gene Pairs Using K-means Clustering and Bipartite Graphs with Statistical Scoring. - Kevin McCormick; Li Liao (BIBM, 2011)

Improving Transmembrane Protein Prediction by Increasing the Utilization of Local Information. - Colin Kern; Li Liao; K. Vijay-Shanker (BICoB, 2011)

A hybrid approach to assessing spoken fluency combining three metrics with support vector machines. - Garrett Molholt; Li Liao (BMEI, 2011)

Ontology-Based Reliability Evaluation for Web Service. - Xifeng Wang; Bixin Li; Li Liao; Chunli Xie (COMPSAC, 2011)

3-Adic System and Chaos. - Lidong Wang; Yingnan Li; Li Liao (J. Appl. Math., 2011)

Improving interacting residue prediction using long-distance information in hidden Markov models. - Colin Kern; Alvaro J. González; Li Liao; K. Vijay-Shanker (BIBM, 2012)

Fuzzy risk analysis of flood disasters based on diffused-interior-outer-set model. - Qiang Zou; Jianzhong Zhou; Chao Zhou 013; Jun Guo; Weiping Deng; Mengqi Yang; Li Liao (Expert Syst. Appl., 2012)

Predicting Ligand Binding Residues and Functional Sites Using Multipositional Correlations with Graph Theoretic Clustering and Kernel CCA. - Alvaro J. González; Li Liao; Cathy H. Wu (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Lattice models with asymmetric propensity matrices for locationally informed protein structure prediction. - Colin Kern; Li Liao (BIBM, 2013)

IDE-JASMIN - An Interactive Graphical Approach for Parallel Programming in Scientific Computing. - Li Liao; Aiqing Zhang; Zhang Yang; Wei Wang; Cuiping Jing (ICSOFT, 2013)

Monitoring Web Services for Conformance. - Bixin Li; Shunhui Ji; Li Liao; Dong Qiu; Mingjie Sun (SOSE, 2013)

A User-Oriented Trust Model for Web Services. - Bixin Li; Rui Song; Li Liao; Cuicui Liu (SOSE, 2013)

Prediction of contact matrix for protein-protein interaction. - Alvaro J. González; Li Liao; Cathy H. Wu (Bioinform., 2013)

A Software Process Ontology and Its Application. - Li Liao; Hareton K. N. Leung (Semantic Web Enabled Software Engineering, 2014)

DDI2PPI: an integrated web server for protein-protein interaction and residue contact matrix predictions. - Tianchuan Du; Alvaro J. González; Qinghua Wang 003; Hongzhan Huang; Li Liao; Cathy H. Wu (BCB, 2014)

HiPro-CodeGen - Automatic Programming for Parallel Numerical Simulations. - Li Liao; Cuiping Jing; Wei Wang; Aiqing Zhang; Zhang Yang (ICSOFT EA, 2014)

PHAT: A Preference and Honesty Aware Trust Model for Web Services. - Bixin Li; Li Liao; Hareton Leung; Rui Song (IEEE Trans. Netw. Serv. Manag., 2014)

Protein-protein interaction network inference from multiple kernels with optimization based on random walk by linear programming. - Lei Huang 018; Li Liao; Cathy H. Wu (BIBM, 2015)

Deep Neural Networks with Parallel Autoencoders for Learning Pairwise Relations: Handwritten Digits Subtraction. - Tianchuan Du; Li Liao (ICMLA, 2015)

Evolutionary Model Selection and Parameter Estimation for Protein-Protein Interaction Network Based on Differential Evolution Algorithm. - Lei Huang 018; Li Liao; Cathy H. Wu (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

A Component Based Graphical Parallel Programming Approach for Numerical Simulation Development. - Li Liao; Zeyao Mo; Aiqing Zhang (BigDataSecurity/HPSC/IDS, 2016)

A Model to Evaluate the Credibility of Service in Cloud Computing Environment. - Li Liao; Bixin Li; Chao Li (DASC/PiCom/DataCom/CyberSciTech, 2016)

Prediction of missing common genes for disease pairs using network based module separation. - Pakeeza Akram; Li Liao (ICCABS, 2016)

A technique to evaluate software evolution based on architecture metric. - Bixin Li; Li Liao; Jingwen Si (SERA, 2016)

Trust analysis of composite service evolution. - Li Liao; ShanShan Qi; Bixin Li (SERA, 2016)

Protein-protein interaction prediction based on multiple kernels and partial network with linear programming. - Lei Huang 018; Li Liao; Cathy H. Wu (BMC Syst. Biol., 2016)

A post-decoding re-ranking algorithm for predicting interacting residues in proteins with hidden Markov models incorporating long-distance information. - Colin Kern; Li Liao (Comput. Biol. Chem., 2016)

Enhancing interacting residue prediction with integrated contact matrix prediction in protein-protein interaction. - Tianchuan Du; Li Liao; Cathy H. Wu (EURASIP J. Bioinform. Syst. Biol., 2016)

Inference of protein-protein interaction networks from multiple heterogeneous data. - Lei Huang 018; Li Liao; Cathy H. Wu (EURASIP J. Bioinform. Syst. Biol., 2016)

Evaluating Software Architecture Evolution Using Performance Simulation. - Bixin Li; Li Liao; Yi Cheng (ACIT/CSII/BCD, 2017)

Evaluating the credibility of cloud services. - Zecheng Li; Li Liao; Hareton Leung; Bixin Li; Chao Li (Comput. Electr. Eng., 2017)

Smart and Green Urban Solid Waste Collection Systems: Advances, Challenges, and Perspectives. - Jiawei Lu; Ni-Bin Chang; Li Liao; Meng-Ying Liao (IEEE Syst. J., 2017)

Evaluate How Cyclomatic Complexity Changes in the Context of Software Evolution. - Huihui Liu; Xufang Gong; Li Liao; Bixin Li (COMPSAC (2), 2018)

Smart and green urban solid waste collection system for differentiated collection with integrated sensor networks. - Jiawei Lu; Ni-Bin Chang; Feng Zhu; Jing Hai; Li Liao (ICNSC, 2018)

Underwater Trajectory Estimation Based on Grid Localization and Smoothing. - Li Liao; Benjamin Henson; Yuriy V. Zakharov (SAM, 2018)

Underwater Localization Based on Grid Computation and Its Application to Transmit Beamforming in Multiuser UWA Communications. - Li Liao; Yuriy V. Zakharov; Paul D. Mitchell (IEEE Access, 2018)

Completing sparse and disconnected protein-protein network by deep learning. - Lei Huang 018; Li Liao; Cathy H. Wu (BMC Bioinform., 2018)

Metabolic Pathway Membership Inference using an Ontology-based Similarity Approach. - Imam Cartealy; Li Liao (ICBBS, 2019)

Detecting De Novo Plasmodesmata Targeting Signals and Identifying PD Targeting Proteins. - Jiefu Li; Jung-Youn Lee; Li Liao (ICCABS, 2019)

A Novel Algorithm for Training Hidden Markov Models with Positive and Negative Examples. - Jiefu Li; Jung-Youn Lee; Li Liao (BIBM, 2020)

A Combined Method for Usage of NLP Libraries Towards Analyzing Software Documents. - Xinyun Cheng; Xianglong Kong; Li Liao; Bixin Li (CAiSE, 2020)

Distributed Facial Feature Clustering Algorithm Based on Spatiotemporal Locality. - Qiutong Lin; Bihua Zhuo; Lili Jiao; Li Liao; Jiangtao Guo (IMIS, 2020)

An analysis of correctness for API recommendation: are the unmatched results useless? - Xianglong Kong; Weina Han; Li Liao; Bixin Li (Sci. China Inf. Sci., 2020)

Smart Grid Dispatching Optimization for System Resilience Improvement. - Li Liao; Chengjun Ji (Complex., 2020)

Investigation of Precursors in VLF Subionospheric Signals Related to Strong Earthquakes (M > 7) in Western China and Possible Explanations. - Shufan Zhao; Xuhui Shen; Li Liao; Zhima Zeren; Chen Zhou 001; Zhuangkai Wang; Jing Cui; Hengxin Lu (Remote. Sens., 2020)

A new algorithm to train hidden Markov models for biological sequences with partial labels. - Jiefu Li; Jung-Youn Lee; Li Liao (BMC Bioinform., 2021)

Human-Robot Interaction: When Investors Adjust the Usage of Robo-Advisors in Peer-to-Peer Lending. - Ruyi Ge; Zhiqiang (Eric) Zheng; Xuan Tian; Li Liao (Inf. Syst. Res., 2021)

Wireless Resource Management and Resilience Optimization of the M2M-Oriented Mobile Communication System. - Li Liao; Chengjun Ji (J. Sensors, 2021)

Numerical Study of Global ELF Electromagnetic Wave Propagation with Respect to Lithosphere-Atmosphere-Ionosphere Coupling. - Zhuangkai Wang; Chen Zhou 001; Shufan Zhao; Xiang Xu; Moran Liu; Yi Liu 064; Li Liao; Xuhui Shen (Remote. Sens., 2021)

Research on Equalization Strategy Based on Credibility Factor Inference for Lithium-Ion Battery Packs. - Li Liao; Heng Chen; Shu Sun; Hongguang Li; Jiuchun Jiang; Tiezhou Wu (IEEE Access, 2022)

CCDetector: Detect Chaincode Vulnerabilities Based on Knowledge Graph. - Xiangfei Xu; Tianyuan Hu; Bixin Li; Li Liao (COMPSAC, 2023)

Improving Disease Comorbidity Prediction with Biologically Supervised Graph Embedding. - Xihan Qin; Li Liao (ICCABS, 2023)

Inter-helical Residue Contact Prediction in α-Helical Transmembrane Proteins Using Structural Features. - Aman Sawhney; Jiefu Li; Li Liao (IWBBIO (2), 2023)

mpXim: A Decentralized Mixing Scheme based on a Multi-Party Discovering Protocol. - Xuan Wang; Li Liao; Dongyu Cao (QRS Companion, 2023)

Commit Classification via Diff-Code GCN based on System Dependency Graph. - Zaixing Zhang; Liang Liu; Jianming Chang; Lulu Wang 001; Li Liao (QRS, 2023)

Artificial Intelligence-Based English Vocabulary Test Research on Cognitive Web Services Platforms: User Retrieval Behavior of English Mobile Learning. - Li Liao (Int. J. e Collab., 2023)

Improving Inter-Helix Contact Prediction With Local 2D Topological Information. - Jiefu Li; Aman Sawhney; Jung-Youn Lee; Li Liao (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Development of a Machine Learning Forecast Model for Global Horizontal Irradiation Adapted to Tibet Based on Visible All-Sky Imaging. - Lingxiao Wu; Tianlu Chen; Nima Ciren; Dui Wang; Huimei Meng; Ming Li; Wei Zhao; Jingxuan Luo; Xiaoru Hu; Shengjie Jia; Li Liao; Yubing Pan; et al. (Remote. Sens., 2023)

Test Case Generation for Access Control Based on UML Activity Diagram. - Ao Fan; Li Liao; Lulu Wang 001; Bixin Li (QRS, 2024)

Improving Disease Comorbidity Prediction Based on Human Interactome with Biologically Supervised Graph Embedding. - Xihan Qin; Li Liao (CoRR, 2024)

Personalized intelligent detection and recommendation algorithm system based on big data. - Li Liao (Intell. Decis. Technol., 2024)

Distributed Data Real-Time Transaction Calculation Based on Collaborative Optimization and Multi-Objective Genetic Algorithm. - Li Liao (Int. J. Intell. Inf. Technol., 2024)

Avoiding Peer Information and Its Effects on Charity Crowdfunding: A Field Experiment. - Tat Y. Chan; Li Liao; Xiumin Martin; Zhengwei Wang (Manag. Sci., 2024)

A Method to Evaluate the Credibility of Domain Knowledge Network Using Validated Expert Knowledge. - Yin Li; Ying Zhou; Li Liao; Bixin Li (Int. J. Softw. Eng. Knowl. Eng., 2025)

Graph Transformer with Disease Subgraph Positional Encoding for Improved Comorbidity Prediction. - Xihan Qin; Li Liao (CoRR, 2025)