Alignment results of SOBOM for OAEI 2010. - Peigang Xu; Yadong Wang 001; Liang Cheng 006; Tianyi Zang (OM, 2010)

Using Semantic Association to Extend and Infer Literature-Oriented Relativity Between Terms. - Liang Cheng 006; Jie Li 055; Yang Hu 008; Yue Jiang; Yongzhuang Liu; Yan-Shuo Chu; Zhenxing Wang; Yadong Wang 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

InfDisSim: A novel method for measuring disease similarity based on information flow. - Yang Hu 008; Meng Zhou 003; Hongbo Shi; Hong Ju; Qinghua Jiang; Liang Cheng 006 (BIBM, 2016)

A novel method to identify pre-microRNA in various species knowledge base. - Tianyi Zhao; Ningyi Zhang; Jun Ren; Peigang Xu; Zhiyan Liu; Liang Cheng 006; Yang Hu 008 (BIBM, 2016)

DisSetSim: an online system for calculating similarity between disease sets. - Yang Hu 008; Lingling Zhao; Zhiyan Liu; Hong Ju; Hongbo Shi; Peigang Xu; Yadong Wang 001; Liang Cheng 006 (J. Biomed. Semant., 2017)

A novel method to identify pre-microRNA in various species knowledge base on various species. - Tianyi Zhao; Ningyi Zhang; Ying Zhang; Jun Ren; Peigang Xu; Zhiyan Liu; Liang Cheng 006; Yang Hu 008 (J. Biomed. Semant., 2017)

A Novel Method for Identifying Alzheimer's Disease-related Proteins. - Yang Hu 008; Jun Zhang 041; Tianyi Zhao; Liang Cheng 006; Tianyi Zang (BIBM, 2018)

DincRNA: a comprehensive web-based bioinformatics toolkit for exploring disease associations and ncRNA function. - Liang Cheng 006; Yang Hu 008; Jie Sun 021; Meng Zhou 003; Qinghua Jiang (Bioinform., 2018)

Identifying diseases-related metabolites using random walk. - Yang Hu 008; Tianyi Zhao; Ningyi Zhang; Tianyi Zang; Jun Zhang 041; Liang Cheng 006 (BMC Bioinform., 2018)

MetSigDis: a manually curated resource for the metabolic signatures of diseases. - Liang Cheng 006; Haixiu Yang; Hengqiang Zhao; Xiaoya Pei; Hongbo Shi; Jie Sun 021; Yunpeng Zhang; Zhenzhen Wang; Meng Zhou 003 (Briefings Bioinform., 2019)

Identifying Alzheimer's disease-related proteins by LRRGD. - Tianyi Zhao; Yang Hu 008; Tianyi Zang; Liang Cheng 006 (BMC Bioinform., 2019)

LncRNA2Target v2.0: a comprehensive database for target genes of lncRNAs in human and mouse. - Liang Cheng 006; Pingping Wang; Rui Tian; Song Wang; Qinghua Guo; Meng Luo 001; Wenyang Zhou; Guiyou Liu; Huijie Jiang; Qinghua Jiang (Nucleic Acids Res., 2019)

OntoSem: an Ontology Semantic Representation Methodology for Biomedical Domain. - Lingling Zhao; Junjie Wang 005; Liang Cheng 006; Chunyu Wang 002 (BIBM, 2020)

Identification of gene signature associated with type 2 diabetes mellitus by integrating mutation and expression data. - Zijun Zhu; Xudong Han; Liang Cheng 006 (BIBM, 2020)

psSubpathway: a software package for flexible identification of phenotype-specific subpathways in cancer progression. - Junwei Han 003; Xudong Han; Qingfei Kong; Liang Cheng 006 (Bioinform., 2020)

DeepLGP: a novel deep learning method for prioritizing lncRNA target genes. - Tianyi Zhao; Yang Hu 008; Jiajie Peng; Liang Cheng 006; Pier Luigi Martelli (Bioinform., 2020)

gutMDisorder: a comprehensive database for dysbiosis of the gut microbiota in disorders and interventions. - Liang Cheng 006; Changlu Qi; He Zhuang; Tongze Fu; Xue Zhang (Nucleic Acids Res., 2020)

Functional alterations caused by mutations reflect evolutionary trends of SARS-CoV-2. - Liang Cheng 006; Xudong Han; Zijun Zhu; Changlu Qi; Ping Wang 033; Xue Zhang (Briefings Bioinform., 2021)

CNA2Subpathway: identification of dysregulated subpathway driven by copy number alterations in cancer. - Yuqi Sheng; Ying Jiang; Yang Yang 009; Xiangmei Li; Jiayue Qiu; Jiashuo Wu; Liang Cheng 006; Junwei Han 003 (Briefings Bioinform., 2021)

Deep-DRM: a computational method for identifying disease-related metabolites based on graph deep learning approaches. - Tianyi Zhao; Yang Hu 008; Liang Cheng 006 (Briefings Bioinform., 2021)

SubtypeDrug: a software package for prioritization of candidate cancer subtype-specific drugs. - Xudong Han; Qingfei Kong; Chonghui Liu; Liang Cheng 006; Junwei Han 003 (Bioinform., 2021)

A comprehensive review of the analysis and integration of omics data for SARS-CoV-2 and COVID-19. - Zijun Zhu; Sainan Zhang; Ping Wang 033; Xinyu Chen; Jianxing Bi; Liang Cheng 006; Xue Zhang (Briefings Bioinform., 2022)

A modified exchange algorithm for distributional robust optimization and applications in risk management. - Hailin Sun; Dali Zhang; Soon-Yi Wu; Liang Cheng 006 (Int. Trans. Oper. Res., 2022)

ELECTRA-DTA: a new compound-protein binding affinity prediction model based on the contextualized sequence encoding. - Junjie Wang 005; Naifeng Wen; Chunyu Wang 002; Lingling Zhao; Liang Cheng 006 (J. Cheminformatics, 2022)

gutMGene: a comprehensive database for target genes of gut microbes and microbial metabolites. - Liang Cheng 006; Changlu Qi; Haixiu Yang; Minke Lu; Yiting Cai; Tongze Fu; Jialiang Ren; Qu Jin; Xue Zhang (Nucleic Acids Res., 2022)

SCovid: single-cell atlases for exposing molecular characteristics of COVID-19 across 10 human tissues. - Changlu Qi; Chao Wang; Lingling Zhao; Zijun Zhu; Ping Wang 033; Sainan Zhang; Liang Cheng 006; Xue Zhang (Nucleic Acids Res., 2022)

MGPLI: exploring multigranular representations for protein-ligand interaction prediction. - Junjie Wang 005; Jie Hu; Huiting Sun; Mengdie Xu; Yun Yu; Yun Liu; Liang Cheng 006 (Bioinform., 2022)

gutMDisorder v2.0: a comprehensive database for dysbiosis of gut microbiota in phenotypes and interventions. - Changlu Qi; Yiting Cai; Kai Qian; Xuefeng Li; Jialiang Ren; Ping Wang 033; Tongze Fu; Tianyi Zhao; Liang Cheng 006; Lei Shi; Xue Zhang (Nucleic Acids Res., 2023)

microbioTA: an atlas of the microbiome in multiple disease tissues of Homo sapiens and Mus musculus. - Ping Wang 033; Sainan Zhang; Guoyou He; Meiyu Du; Changlu Qi; Ruyue Liu; Siyuan Zhang; Liang Cheng 006; Lei Shi; Xue Zhang (Nucleic Acids Res., 2023)

iATMEcell: identification of abnormal tumor microenvironment cells to predict the clinical outcomes in cancer based on cell-cell crosstalk network. - Yuqi Sheng; Jiashuo Wu; Xiangmei Li; Jiayue Qiu; Ji Li; Qinyu Ge; Liang Cheng 006; Junwei Han 003 (Briefings Bioinform., 2023)

Microbiome characteristics description of COVID-19 patients based on bulk RNA-seq and scRNA-Seq data. - Sainan Zhang; Xingwang Liu; Yue Zhao; Ping Wang 033; Rui Yu; Peigang Xu; Yue Jiang; Liang Cheng 006 (Comput. Biol. Medicine, 2023)

Attention mechanism models for precision medicine. - Liang Cheng 006 (Briefings Bioinform., 2024)

SCancerRNA: Expression at the Single-cell Level and Interaction Resource of Non-coding RNA Biomarkers for Cancers. - Hongzhe Guo; Liyuan Zhang; Xinran Cui; Liang Cheng 006; Tianyi Zhao; Yadong Wang 001 (Genom. Proteom. Bioinform., 2024)

Blood microbial analyses reveal long-term effects of SARS-CoV-2 infection on patients who recovered from COVID-19. - Ping Wang 033; Sainan Zhang; Changlu Qi; Chao Wang; Zijun Zhu; Lei Shi; Liang Cheng 006; Xue Zhang (Comput. Biol. Medicine, 2024)