A Network Biology Approach to Predicting Drug Cardiotoxicity. - Liang-Chin Huang; Jake Yue Chen (BIBM, 2011)

A weighted and integrated drug-target interactome: drug repurposing for schizophrenia as a use case. - Liang-Chin Huang; Ergin Soysal; W. Jim Zheng; Zhongming Zhao; Hua Xu 001; Jingchun Sun (BMC Syst. Biol., 2015)

Extracting genetic alteration information for personalized cancer therapy from ClinicalTrials.gov. - Jun Xu 007; Hee-Jin Lee; Jia Zeng; Yonghui Wu; Yaoyun Zhang; Liang-Chin Huang; Amber M. Johnson; Vijaykumar Holla; Ann M. Bailey; Trevor Cohen; Funda Meric-Bernstam; Elmer V. Bernstam; et al. (J. Am. Medical Informatics Assoc., 2016)

Quantitative Structure-Mutation-Activity Relationship Tests (QSMART) model for protein kinase inhibitor response prediction. - Liang-Chin Huang; Wayland Yeung; Ye Wang; Huimin Cheng; Aarya Venkat; Sheng Li 001; Ping Ma; Khaled Rasheed; Natarajan Kannan (BMC Bioinform., 2020)

PDBe-KB: a community-driven resource for structural and functional annotations. - Mihaly Varadi; John M. Berrisford; Mandar S. Deshpande; Sreenath Nair; Aleksandras Gutmanas; David R. Armstrong; Lukás Pravda; Bissan Al-Lazikani; Stephen Anyango; Geoffrey J. Barton; Karel Berka; Tom L. Blundell; et al. (Nucleic Acids Res., 2020)

KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases. - Liang-Chin Huang; Rahil Taujale; Nathan Gravel; Aarya Venkat; Wayland Yeung; Dominic P. Byrne; Patrick A. Eyers; Natarajan Kannan (BMC Bioinform., 2021)

Extracting Drug-Protein Relation from Literature Using Ensembles of Biomedical Transformers. - Avisha Das; Zhao Li; Qiang Wei 002; Jianfu Li; Liang-Chin Huang; Yan Hu; Rongbin Li; Wenjin Jim Zheng; Hua Xu 001 (MedInfo, 2023)

Ensemble pretrained language models to extract biomedical knowledge from literature. - Zhao Li; Qiang Wei 002; Liang-Chin Huang; Jianfu Li; Yan Hu; Yao-Shun Chuang; Jianping He 002; Avisha Das; Vipina Kuttichi Keloth; Yuntao Yang; Chiamaka S. Diala; Kirk E. Roberts; et al. (J. Am. Medical Informatics Assoc., 2024)

AutoCriteria: a generalizable clinical trial eligibility criteria extraction system powered by large language models. - Surabhi Datta; Kyeryoung Lee; Hunki Paek; Frank J. Manion; Nneka Ofoegbu; Jingcheng Du; Ying Li; Liang-Chin Huang; Jingqi Wang; Bin Lin; Hua Xu; Xiaoyan Wang (J. Am. Medical Informatics Assoc., 2024)