DS-MVP: identifying disease-specific pathogenicity of missense variants by pre-training representation. - Qiufeng Chen; Lijun Quan; Lexin Cao; Bei Zhang; Zhijun Zhang; Liangchen Peng; Junkai Wang; Yelu Jiang; Liangpeng Nie; Geng Li; Tingfang Wu; Qiang Lyu (Briefings Bioinform., 2025)

AffiGrapher: Contrastive Heterogeneous Graph Learning with Aromatic Virtual Nodes for RNA-Small Molecule Binding Affinity Prediction. - Junkai Wang; Jian Wu; Zhijun Zhang; Yelu Jiang; Liangchen Peng; Bei Zhang; Qiufeng Chen; Lexin Cao; Lijun Quan; Qiang Lyu (J. Chem. Inf. Model., 2025)

MVCL-DTI: Predicting Drug-Target Interactions Using a Multiview Contrastive Learning Model on a Heterogeneous Graph. - Bei Zhang; Lijun Quan; Zhijun Zhang; Lexin Cao; Qiufeng Chen; Liangchen Peng; Junkai Wang; Yelu Jiang; Liangpeng Nie; Geng Li; Tingfang Wu; Qiang Lyu (J. Chem. Inf. Model., 2025)