Multi-dimensional data integration algorithm based on random walk with restart. - Yuqi Wen; Xinyu Song 002; Bowei Yan; Xiaoxi Yang; Lianlian Wu; Dongjin Leng; Song He; Xiaochen Bo (BMC Bioinform., 2021)

Synthetic Lethal Interactions Prediction Based on Multiple Similarity Measures Fusion. - Lianlian Wu; Yuqi Wen; Xiaoxi Yang; Bowei Yan; Song He; Xiaochen Bo (J. Comput. Sci. Technol., 2021)

COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data. - Song He; Xinyu Song 002; Xiaoxi Yang; Jijun Yu; Yuqi Wen; Lianlian Wu; Bowei Yan; Jiannan Feng; Xiaochen Bo (PLoS Comput. Biol., 2021)

An enhanced cascade-based deep forest model for drug combination prediction. - Weiping Lin; Lianlian Wu; Yixin Zhang; Yuqi Wen; Bowei Yan; Chong Dai; Kun-Hong Liu 001; Song He; Xiaochen Bo (Briefings Bioinform., 2022)

Computational methods, databases and tools for synthetic lethality prediction. - Jing Wang; Qinglong Zhang; Junshan Han; Yanpeng Zhao; Caiyun Zhao; Bowei Yan; Chong Dai; Lianlian Wu; Yuqi Wen; Yixin Zhang; Dongjin Leng; Zhongming Wang; et al. (Briefings Bioinform., 2022)

Machine learning methods, databases and tools for drug combination prediction. - Lianlian Wu; Yuqi Wen; Dongjin Leng; Qinglong Zhang; Chong Dai; Zhongming Wang; Ziqi Liu; Bowei Yan; Yixin Zhang; Jing Wang; Song He; Xiaochen Bo (Briefings Bioinform., 2022)

Systematic optimization of host-directed therapeutic targets and preclinical validation of repositioned antiviral drugs. - Dafei Xie; Song He; Lu Han; Lianlian Wu; Hai Huang; Huan Tao; Pingkun Zhou; Xunlong Shi; Hui Bai; Xiaochen Bo (Briefings Bioinform., 2022)

PLA-MoRe: A Protein-Ligand Binding Affinity Prediction Model via Comprehensive Molecular Representations. - Qingyu Li; Xiaochang Zhang; Lianlian Wu; Xiaochen Bo; Song He; Shengqi Wang (J. Chem. Inf. Model., 2022)

An interpretable artificial intelligence system for detecting risk factors of gastroesophageal variceal bleeding. - Jing Wang; Zhengqiang Wang; Mingkai Chen; Yong Xiao; Shi Chen; Lianlian Wu; Liwen Yao; Xiaoda Jiang; Jiao Li; Ming Xu; Mengjuan Lin; Yijie Zhu; et al. (npj Digit. Medicine, 2022)

A Multi-View Learning-Based Bayesian Ruleset Extraction Algorithm For Accurate Hepatotoxicity Prediction. - Siyang Chen; Lianlian Wu; Yong Xu 009; Kunhong Liu 001; Song He; Xiaochen Bo (BIBM, 2023)

Drug-target and Drug-disease Association Prediction based on Drug-target-disease Network and Multi-task Learning. - Binyu Wang; Yunhao Zhang; Hongyan Ye; Lianlian Wu; Song He; Xiaochen Bo; Zhongnan Zhang (BIBM, 2023)

HSGCL-DTA: Hybrid-scale Graph Contrastive Learning based Drug-Target Binding Affinity Prediction. - Hongyan Ye; Yingying Song; Binyu Wang; Lianlian Wu; Song He; Xiaochen Bo; Zhongnan Zhang (ICTAI, 2023)

Publisher Correction: Explainable artificial intelligence incorporated with domain knowledge diagnosing early gastric neoplasms under white light endoscopy. - Zehua Dong; Junxiao Wang; Yanxia Li; Yunchao Deng; Wei Zhou; Xiaoquan Zeng; Dexin Gong; Jun Liu; Jie Pan; Renduo Shang; Youming Xu; Ming Xu; et al. (npj Digit. Medicine, 2023)

Explainable artificial intelligence incorporated with domain knowledge diagnosing early gastric neoplasms under white light endoscopy. - Zehua Dong; Junxiao Wang; Yanxia Li; Yunchao Deng; Wei Zhou; Xiaoquan Zeng; Dexin Gong; Jun Liu; Jie Pan; Renduo Shang; Youming Xu; Ming Xu; et al. (npj Digit. Medicine, 2023)

TOXRIC: a comprehensive database of toxicological data and benchmarks. - Lianlian Wu; Bowei Yan; Junshan Han; Ruijiang Li; Jian Xiao; Song He; Xiaochen Bo (Nucleic Acids Res., 2023)

A Genetic Algorithm-Based Ensemble Learning Framework for Drug Combination Prediction. - Lianlian Wu; Xiaona Ye; Yixin Zhang; Jie Gao; Zhikai Lin; Binsheng Sui; Yuqi Wen; Qingqiang Wu 001; Kunhong Liu 001; Song He; Xiaochen Bo (J. Chem. Inf. Model., 2023)

EDST: a decision stump based ensemble algorithm for synergistic drug combination prediction. - Jing Chen; Lianlian Wu; Kunhong Liu 001; Yong Xu 009; Song He; Xiaochen Bo (BMC Bioinform., 2023)

CPDT: A Novel Cluster-based Paired Decision Tree for Identifying Biomedical Entity Interactions. - Jiayu Zou; Lianlian Wu; Weiping Lin; Kunhong Liu 001; Yong Xu 009; Song He; Xiaochen Bo (BIBM, 2024)

Multi-task multi-view and iterative error-correcting random forest for acute toxicity prediction. - Jie Gao; Lianlian Wu; Guangyi Lin; Jiayu Zou; Bowei Yan; Kunhong Liu 001; Song He; Xiaochen Bo (Expert Syst. Appl., 2025)

A feature pair-based neural network embedded decision tree for synergistic drug combination prediction. - Jiayu Zou; Lianlian Wu; Kunhong Liu 001; Yong Xu 009; Song He; Xiaochen Bo (Pattern Recognit., 2025)