Krait: an ultrafast tool for genome-wide survey of microsatellites and primer design. - Lianming Du; Chi Zhang; Qin Liu; Xiuyue Zhang; Bisong Yue (Bioinform., 2018)

MACSNVdb: a high-quality SNV database for interspecies genetic divergence investigation among macaques. - Lianming Du; Tao Guo; Qin Liu; Xiuyue Zhang; Jinchuan Xing; Bisong Yue; Jing Li; Zhenxin Fan (Database J. Biol. Databases Curation, 2020)

Dockey: a modern integrated tool for large-scale molecular docking and virtual screening. - Lianming Du; Chaoyue Geng; Qiang-Lin Zeng; Ting Huang; Jie Tang; Yiwen Chu; Kelei Zhao (Briefings Bioinform., 2023)

Pytrf: a python package for finding tandem repeats from genomic sequences. - Lianming Du; Dalin Sun; Jiahao Chen; Xinyi Zhou; Kelei Zhao; Qiang-Lin Zeng; Nan Yang (BMC Bioinform., 2025)