Automatic outlier detection using hidden Markov model for cerebellar lobule segmentation. - Lianrui Zuo; Aaron Carass; Shuo Han 001; Jerry L. Prince (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2018)

Automatic quality control using hierarchical shape analysis for cerebellum parcellation. - Lianrui Zuo; Shuo Han 001; Aaron Carass; Sarah H. Ying; Chiadikaobi U. Onyike; Jerry L. Prince (Image Processing, 2019)

A Disentangled Latent Space for Cross-Site MRI Harmonization. - Blake E. Dewey; Lianrui Zuo; Aaron Carass; Yufan He; Yihao Liu 003; Ellen M. Mowry; Scott D. Newsome; Jiwon Oh; Peter A. Calabresi; Jerry L. Prince (MICCAI (7), 2020)

Self Domain Adapted Network. - Yufan He; Aaron Carass; Lianrui Zuo; Blake E. Dewey; Jerry L. Prince (MICCAI (1), 2020)

Synthesizing Realistic Brain MR Images with Noise Control. - Lianrui Zuo; Blake E. Dewey; Aaron Carass; Yufan He; Muhan Shao; Jacob C. Reinhold; Jerry L. Prince (SASHIMI@MICCAI, 2020)

Variational intensity cross channel encoder for unsupervised vessel segmentation on OCT angiography. - Yihao Liu 003; Lianrui Zuo; Aaron Carass; Yufan He; Angeliki Filippatou; Sharon D. Solomon; Shiv Saidha; Peter A. Calabresi; Jerry L. Prince (Image Processing, 2020)

Information-Based Disentangled Representation Learning for Unsupervised MR Harmonization. - Lianrui Zuo; Blake E. Dewey; Aaron Carass; Yihao Liu 003; Yufan He; Peter A. Calabresi; Jerry L. Prince (IPMI, 2021)

Autoencoder based self-supervised test-time adaptation for medical image analysis. - Yufan He; Aaron Carass; Lianrui Zuo; Blake E. Dewey; Jerry L. Prince (Medical Image Anal., 2021)

Unsupervised MR harmonization by learning disentangled representations using information bottleneck theory. - Lianrui Zuo; Blake E. Dewey; Yihao Liu 003; Yufan He; Scott D. Newsome; Ellen M. Mowry; Susan M. Resnick; Jerry L. Prince; Aaron Carass (NeuroImage, 2021)

Coordinate Translator for Learning Deformable Medical Image Registration. - Yihao Liu 003; Lianrui Zuo; Shuo Han 001; Yuan Xue 002; Jerry L. Prince; Aaron Carass (MMMI@MICCAI, 2022)

Bi-directional Synthesis of Pre- and Post-contrast MRI via Guided Feature Disentanglement. - Yuan Xue 002; Blake E. Dewey; Lianrui Zuo; Shuo Han 001; Aaron Carass; Peiyu Duan; Samuel W. Remedios; Dzung L. Pham; Shiv Saidha; Peter A. Calabresi; Jerry L. Prince (SASHIMI@MICCAI, 2022)

Disentangling a Single MR Modality. - Lianrui Zuo; Yihao Liu 003; Yuan Xue 002; Shuo Han 001; Murat Bilgel; Susan M. Resnick; Jerry L. Prince; Aaron Carass (DALI@MICCAI, 2022)

Cranial meninges reconstruction based on convolutional networks and deformable models: applications to longitudinal study of normal aging. - Peiyu Duan; Shuo Han 001; Lianrui Zuo; Yang An; Yihao Liu 003; Ahmed Alshareef; Junghoon Lee; Aaron Carass; Susan M. Resnick; Jerry L. Prince (Image Processing, 2022)

Evaluating the impact of MR image contrast on whole brain segmentation. - Savannah Hays; Lianrui Zuo; Aaron Carass; Jerry L. Prince (Image Processing, 2022)

Evaluating the impact of MR image harmonization on thalamus deep network segmentation. - Muhan Shao; Lianrui Zuo; Aaron Carass; Jiachen Zhuo; Rao P. Gullapalli; Jerry L. Prince (Image Processing, 2022)

Coordinate Translator for Learning Deformable Medical Image Registration. - Yihao Liu 003; Lianrui Zuo; Shuo Han 001; Jerry L. Prince; Aaron Carass (CoRR, 2022)

HACA3: A Unified Approach for Multi-site MR Image Harmonization. - Lianrui Zuo; Yihao Liu 003; Yuan Xue 002; Blake E. Dewey; Murat Bilgel; Ellen M. Mowry; Scott D. Newsome; Peter A. Calabresi; Susan M. Resnick; Jerry L. Prince; Aaron Carass (CoRR, 2022)

Disentangled Representation Learning for OCTA Vessel Segmentation With Limited Training Data. - Yihao Liu 003; Aaron Carass; Lianrui Zuo; Yufan He; Shuo Han 001; Lorenzo Gregori; Sean Murray; Rohit Mishra; Jianqin Lei; Peter A. Calabresi; Shiv Saidha; Jerry L. Prince (IEEE Trans. Medical Imaging, 2022)

Rapid Brain Meninges Surface Reconstruction with Layer Topology Guarantee. - Peiyu Duan; Yuan Xue 002; Shuo Han 001; Lianrui Zuo; Aaron Carass; Caitlyn Bernhard; Savannah Hays; Peter A. Calabresi; Susan M. Resnick; James S. Duncan; Jerry L. Prince (ISBI, 2023)

Automated Ventricle Parcellation and Evan's Ratio Computation in Pre- and Post-Surgical Ventriculomegaly. - Yuli Wang; Anqi Feng; Yuan Xue 002; Lianrui Zuo; Yihao Liu 003; Ari M. Blitz; Mark G. Luciano; Aaron Carass; Jerry L. Prince (ISBI, 2023)

Investigating the effect of cerebral atrophy on brain deformation using subject-specific models. - Allen Hong; Aaron Carass; Lianrui Zuo; Jerry L. Prince; Ahmed Alshareef (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2023)

Self-Supervised Super-Resolution for Anisotropic MR Images with and Without Slice Gap. - Samuel W. Remedios; Shuo Han 001; Lianrui Zuo; Aaron Carass; Dzung L. Pham; Jerry L. Prince; Blake E. Dewey (SASHIMI@MICCAI, 2023)

Recurrent Self Fusion: Iterative Denoising for Consistent Retinal OCT Segmentation. - Shuwen Wei; Yihao Liu 003; Zhangxing Bian; Yuli Wang; Lianrui Zuo; Peter A. Calabresi; Shiv Saidha; Jerry L. Prince; Aaron Carass (OMIA@MICCAI, 2023)

Unsupervised quality assurance for brain MR image rigid registration using latent shape representation. - Yuan Xue 002; Lianrui Zuo; Samuel W. Remedios; Blake E. Dewey; Peiyu Duan; Yihao Liu 003; Rendong Zhang; Scott D. Newsome; Ellen M. Mowry; Aaron Carass; Jerry L. Prince (Image Processing, 2023)

Joint synthesis of WMn MPRAGE and parameter maps using deep learning and an imaging equation. - Pouria Tohidi; Shuo Han 001; Lianrui Zuo; Jiachen Zhuo; Steve Roys; Aaron Carass; Rao P. Gullapalli; Jerry L. Prince (Image Processing, 2023)

A latent space for unsupervised MR image quality control via artifact assessment. - Lianrui Zuo; Yuan Xue 002; Blake E. Dewey; Yihao Liu 003; Jerry L. Prince; Aaron Carass (Image Processing, 2023)

HACA3: A unified approach for multi-site MR image harmonization. - Lianrui Zuo; Yihao Liu 003; Yuan Xue 002; Blake E. Dewey; Samuel W. Remedios; Savannah Hays; Murat Bilgel; Ellen M. Mowry; Scott D. Newsome; Peter A. Calabresi; Susan M. Resnick; Jerry L. Prince; et al. (Comput. Medical Imaging Graph., 2023)

Towards an Accurate and Generalizable Multiple Sclerosis Lesion Segmentation Model Using Self-Ensembled Lesion Fusion. - Jinwei Zhang; Lianrui Zuo; Blake E. Dewey; Samuel W. Remedios; Dzung L. Pham; Aaron Carass; Jerry L. Prince (ISBI, 2024)

Beyond MR Image Harmonization: Resolution Matters Too. - Savannah Hays; Samuel W. Remedios; Lianrui Zuo; Ellen M. Mowry; Scott D. Newsome; Peter A. Calabresi; Aaron Carass; Blake E. Dewey; Jerry L. Prince (SASHIMI@MICCAI, 2024)

Vector Field Attention for Deformable Image Registration. - Yihao Liu 003; Junyu Chen 002; Lianrui Zuo; Aaron Carass; Jerry L. Prince (CoRR, 2024)

Influence of Early through Late Fusion on Pancreas Segmentation from Imperfectly Registered Multimodal MRI. - Lucas W. Remedios; Han Liu; Samuel W. Remedios; Lianrui Zuo; Adam M. Saunders; Shunxing Bao; Yuankai Huo; Alvin C. Powers; John Virostko; Bennett A. Landman (CoRR, 2024)

Multi-Modality Conditioned Variational U-Net for Field-of-View Extension in Brain Diffusion MRI. - Zhiyuan Li 012; Tianyuan Yao; Praitayini Kanakaraj; Chenyu Gao; Shunxing Bao; Lianrui Zuo; Michael E. Kim; Nancy R. Newlin; Gaurav Rudravaram; Nazirah Mohd Khairi; Yuankai Huo; Kurt G. Schilling; et al. (CoRR, 2024)

Brain age identification from diffusion MRI synergistically predicts neurodegenerative disease. - Chenyu Gao; Michael E. Kim; Karthik Ramadass; Praitayini Kanakaraj; Aravind R. Krishnan; Adam M. Saunders; Nancy R. Newlin; Ho Hin Lee; Qi Yang 004; Warren D. Taylor; Brian D. Boyd; Lori L. Beason-Held; et al. (CoRR, 2024)

Beyond the Lungs: Extending the Field of View in Chest CT with Latent Diffusion Models. - Lianrui Zuo; Kaiwen Xu; Dingjie Su; Xin Yu 010; Aravind R. Krishnan; Yihao Liu; Shunxing Bao; Thomas Z. Li; Kim L. Sandler; Fabien Maldonado; Bennett A. Landman (CoRR, 2025)

Robust Body Composition Analysis by Generating 3D CT Volumes from Limited 2D Slices. - Lianrui Zuo; Xin Yu 010; Dingjie Su; Kaiwen Xu; Aravind R. Krishnan; Yihao Liu; Shunxing Bao; Fabien Maldonado; Luigi Ferrucci; Bennett A. Landman (CoRR, 2025)

Pitfalls of defacing whole-head MRI: re-identification risk with diffusion models and compromised research potential. - Chenyu Gao; Kaiwen Xu; Michael E. Kim; Lianrui Zuo; Zhiyuan Li 012; Derek B. Archer; Timothy J. Hohman; Ann Zenobia Moore; Luigi Ferrucci; Lori L. Beason-Held; Susan M. Resnick; Christos Davatzikos; et al. (CoRR, 2025)

Investigating the impact of kernel harmonization and deformable registration on inspiratory and expiratory chest CT images for people with COPD. - Aravind R. Krishnan; Yihao Liu; Kaiwen Xu; Michael E. Kim; Lucas W. Remedios; Gaurav Rudravaram; Adam M. Saunders; Bradley W. Richmond; Kim L. Sandler; Fabien Maldonado; Bennett A. Landman; Lianrui Zuo (CoRR, 2025)

Multipath cycleGAN for harmonization of paired and unpaired low-dose lung computed tomography reconstruction kernels. - Aravind R. Krishnan; Thomas Z. Li; Lucas W. Remedios; Michael E. Kim; Chenyu Gao; Gaurav Rudravaram; Elyssa M. McMaster; Adam M. Saunders; Shunxing Bao; Kaiwen Xu; Lianrui Zuo; Kim L. Sandler; et al. (CoRR, 2025)

Beyond the LUMIR challenge: The pathway to foundational registration models. - Junyu Chen 002; Shuwen Wei; Joel Honkamaa; Pekka Marttinen; Hang Zhang; Min Liu; Yichao Zhou; Zuopeng Tan; Zhuoyuan Wang; Yi Wang; Hongchao Zhou; Shunbo Hu; et al. (CoRR, 2025)