SVM-Prot: web-based support vector machine software for functional classification of a protein from its primary sequence. - Congzhong Cai; Lianyi Han; Zhi Liang Ji; X. Chen; Yuzong Chen 002 (Nucleic Acids Res., 2003)

KDBI: Kinetic Data of Bio-molecular Interactions database. - Zhi Liang Ji; X. Chen; C. J. Zheng; L. X. Yao; Lianyi Han; Wee Kiang Yeo; P. C. Chung; H. S. Puy; Y. T. Tay; A. Muhammad; Yuzong Chen 002 (Nucleic Acids Res., 2003)

TRMP: a database of therapeutically relevant multiple pathways. - C. J. Zheng; H. Zhou; B. Xie; Lianyi Han; Chun Wei Yap; Yuzong Chen 002 (Bioinform., 2004)

MoViES: molecular vibrations evaluation server for analysis of fluctuational dynamics of proteins and nucleic acids. - Zhi Wei Cao; Ying Xue 001; Lianyi Han; B. Xie; H. Zhou; C. J. Zheng; Honghuang Lin; Yuzong Chen 002 (Nucleic Acids Res., 2004)

Prediction of Transmembrane Proteins from Their Primary Sequence by Support Vector Machine Approach. - Congzhong Cai; Qianfei Yuan; Hanguang Xiao; Xinghua Liu; Lianyi Han; Yuzong Chen 002 (ICIC (3), 2006)

Prediction of the functional class of metal-binding proteins from sequence derived physicochemical properties by support vector machine approach. - H. H. Lin; Lianyi Han; H. L. Zhang; C. J. Zheng; B. Xie; Zhi Wei Cao; Yuzong Chen 002 (BMC Bioinform., 2006)

PEARLS: Program for Energetic Analysis of Receptor-Ligand System. - Lianyi Han; Honghuang Lin; Ze-Rong Li; C. J. Zheng; Zhi Wei Cao; B. Xie; Yuzong Chen 002 (J. Chem. Inf. Model., 2006)

PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence. - Ze-Rong Li; Honghuang Lin; Lianyi Han; L. Jiang; X. Chen; Yuzong Chen 002 (Nucleic Acids Res., 2006)

PharmGED: Pharmacogenetic Effect Database. - C. J. Zheng; Lianyi Han; B. Xie; C. Y. Liew; Serene A. K. Ong; J. Cui; H. L. Zhang; Z. Q. Tang; S. H. Gan; L. Jiang; Yuzong Chen 002 (Nucleic Acids Res., 2007)

Developing and validating predictive decision tree models from mining chemical structural fingerprints and high-throughput screening data in PubChem. - Lianyi Han; Yanli Wang; Stephen H. Bryant (BMC Bioinform., 2008)

A survey of across-target bioactivity results of small molecules in PubChem. - Lianyi Han; Yanli Wang; Stephen H. Bryant (Bioinform., 2009)

The Text-mining based PubChem Bioassay neighboring analysis. - Lianyi Han; Tugba O. Suzek; Yanli Wang; Steve H. Bryant (BMC Bioinform., 2010)

The NCBI BioSystems database. - Lewis Y. Geer; Aron Marchler-Bauer; Renata C. Geer; Lianyi Han; Jane He; Siqian He; Chunlei Liu 002; Wenyao Shi; Stephen H. Bryant (Nucleic Acids Res., 2010)

Update of TTD: Therapeutic Target Database. - Feng Zhu 004; Bu-Cong Han; Pankaj Kumar; Xianghui Liu; Xiaohua Ma 003; XiaoNa Wei; Lu Huang; Yangfan Guo; Lianyi Han; Chanjuan Zheng; Yuzong Chen 002 (Nucleic Acids Res., 2010)

PubChem3D: a new resource for scientists. - Evan Bolton; Jie Chen 039; Sunghwan Kim 002; Lianyi Han; Siqian He; Wenyao Shi; Vahan Simonyan; Yan Sun; Paul A. Thiessen; Jiyao Wang; Bo Yu 016; Jian Zhang 038; et al. (J. Cheminformatics, 2011)

PubChem's BioAssay Database. - Yanli Wang; Jewen Xiao; Tugba O. Suzek; Jian Zhang 038; Jiyao Wang; Zhigang Zhou; Lianyi Han; Karen Karapetyan; Svetlana Dracheva; Benjamin A. Shoemaker; Evan Bolton; Asta Gindulyte; et al. (Nucleic Acids Res., 2012)

PubChem structure-activity relationship (SAR) clusters. - Sunghwan Kim 002; Lianyi Han; Bo Yu 016; Volker Hähnke; Evan Bolton; Stephen H. Bryant (J. Cheminformatics, 2015)

Target enhanced 2D similarity search by using explicit biological activity annotations and profiles. - Xiang Yu; Lewis Y. Geer; Lianyi Han; Stephen H. Bryant (J. Cheminformatics, 2015)

PubChem Substance and Compound databases. - Sunghwan Kim 002; Paul A. Thiessen; Evan Bolton; Jie Chen 039; Gang Fu; Asta Gindulyte; Lianyi Han; Jane He; Siqian He; Benjamin A. Shoemaker; Jiyao Wang; Bo Yu 016; et al. (Nucleic Acids Res., 2016)

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures. - Aron Marchler-Bauer; Bo Yu 016; Lianyi Han; Jane He; Christopher J. Lanczycki; Shennan Lu; Farideh Chitsaz; Myra K. Derbyshire; Renata C. Geer; Noreen R. Gonzales; Marc Gwadz; David I. Hurwitz; et al. (Nucleic Acids Res., 2017)

Object-Guided Instance Segmentation for Biological Images. - Jingru Yi; Hui Tang; Pengxiang Wu; Bo Liu 005; Daniel J. Hoeppner; Dimitris N. Metaxas; Lianyi Han; Wei Fan 001 (AAAI, 2020)

Object-Guided Instance Segmentation With Auxiliary Feature Refinement for Biological Images. - Jingru Yi; Pengxiang Wu; Hui Tang; Bo Liu 005; Qiaoying Huang; Hui Qu; Lianyi Han; Wei Fan 001; Daniel J. Hoeppner; Dimitris N. Metaxas (IEEE Trans. Medical Imaging, 2021)

MEGAN: Memory Enhanced Graph Attention Network for Space-Time Video Super-Resolution. - Chenyu You; Lianyi Han; Aosong Feng; Ruihan Zhao 001; Hui Tang; Wei Fan 001 (WACV, 2022)

CovInter: interaction data between coronavirus RNAs and host proteins. - Kuerbannisha Amahong; Wei Zhang 218; Ying Zhou; Song Zhang; Jiayi Yin; Fengcheng Li; Hong-Quan Xu; Tian-Ci Yan; Zi-Xuan Yue; Yu-Hong Liu; Tingjun Hou; Yunqing Qiu; et al. (Nucleic Acids Res., 2023)

RVvictor: Virus RNA-directed molecular interactions for RNA virus infection. - Kuerbannisha Amahong; Wei Zhang 218; Yu-Hong Liu; Teng Li; Shijie Huang; Lianyi Han; Lin Tao; Feng Zhu 004 (Comput. Biol. Medicine, 2024)

rU-Net, Multi-Scale Feature Fusion and Transfer Learning: Unlocking the Potential of Cuffless Blood Pressure Monitoring With PPG and ECG. - Jiaming Chen; Xueling Zhou; Lei Feng; Bingo Wing-Kuen Ling; Lianyi Han; Hongtao Zhang 006 (IEEE J. Biomed. Health Informatics, 2025)