Improving Functional Annotation of Non-Synonomous SNPs with Information Theory. - Rachel Karchin; Libusha Kelly; Andrej Sali (Pacific Symposium on Biocomputing, 2005)

LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources. - Rachel Karchin; Mark Diekhans; Libusha Kelly; Daryl J. Thomas; Ursula Pieper 001; Narayanan Eswar; David Haussler; Andrej Sali (Bioinform., 2005)

MODBASE: a database of annotated comparative protein structure models and associated resources. - Ursula Pieper 001; Narayanan Eswar; Fred P. Davis; Hannes Braberg; Mallur S. Madhusudhan; Andrea Rossi 005; Marc A. Martí-Renom; Rachel Karchin; Ben M. Webb; David Eramian; Min-Yi Shen; Libusha Kelly; et al. (Nucleic Acids Res., 2006)

Protein Interactions and Disease Phenotypes in the ABC Transporter Superfamily. - Libusha Kelly; Rachel Karchin; Andrej Sali (Pacific Symposium on Biocomputing, 2007)

MODBASE, a database of annotated comparative protein structure models and associated resources. - Ursula Pieper 001; Narayanan Eswar; Ben M. Webb; David Eramian; Libusha Kelly; David T. Barkan; Hannah Carter; Parminder Mankoo; Rachel Karchin; Marc A. Martí-Renom; Fred P. Davis; Andrej Sali (Nucleic Acids Res., 2009)

ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage. - Libusha Kelly; Katherine H. Huang; Huiming Ding; Sallie W. Chisholm (Nucleic Acids Res., 2012)

Fireworks: Reproducible Machine Learning and Preprocessing with PyTorch. - Saad Khan 004; Libusha Kelly (J. Open Source Softw., 2019)

Multiclass Disease Classification from Microbial Whole-Community Metagenomes. - Saad Khan 004; Libusha Kelly (PSB, 2020)

Longitudinally monitored immune biomarkers predict the timing of COVID-19 outcomes. - Gorka Lasso; Saad Khan 004; Stephanie A. Allen; Margarette Mariano; Catalina Florez; Erika P. Orner; Jose A. Quiroz; Gregory Quevedo; Aldo Massimi; Aditi Hegde; Ariel S. Wirchnianski; Robert H. Bortz III; et al. (PLoS Comput. Biol., 2022)