Linguistic quantifiers based on Choquet integrals. - Licong Cui; Yongming Li 001 (Int. J. Approx. Reason., 2008)

Intuitionistic Fuzzy Linguistic Quantifiers Based on Intuitionistic Fuzzy-Valued Fuzzy Measures and integrals. - Licong Cui; Yongming Li 001; Xiaohong Zhang 001 (Int. J. Uncertain. Fuzziness Knowl. Based Syst., 2009)

A set coverage problem. - Guo-Qiang Zhang 001; Licong Cui (Inf. Process. Lett., 2010)

EpiDEA: Extracting Structured Epilepsy and Seizure Information from Patient Discharge Summaries for Cohort Identification. - Licong Cui; Samden D. Lhatoo; Guo-Qiang Zhang 001; Satya Sanket Sahoo; Alireza Bozorgi (AMIA, 2012)

A generalized non-pumping Lemma for Regular Languages. - Licong Cui; Guo-Qiang Zhang 001 (QLSC, 2012)

Concatenation and Kleene Star on Deterministic finite Automata. - Guo-Qiang Zhang 001; Xiangnan Zhou; Robert Fraser; Licong Cui (QLSC, 2012)

Querying Complex Federated Clinical Data Using Ontological Mapping and Subsumption Reasoning. - Licong Cui; Remo Mueller; Satya Sanket Sahoo; Guo-Qiang Zhang 001 (ICHI, 2013)

A Semantic-based Approach for Exploring Consumer Health Questions Using UMLS. - Licong Cui; Shiqiang Tao; Guo-Qiang Zhang 001 (AMIA, 2014)

MEDCIS: Multi-Modality Epilepsy Data Capture and Integration System. - Guo-Qiang Zhang 001; Licong Cui; Samden D. Lhatoo; Satya S. Sahoo (AMIA, 2014)

MaPLE: A MapReduce Pipeline for Lattice-based Evaluation and its application to SNOMED CT. - Guo-Qiang Zhang 001; Wei Zhu 010; Mengmeng Sun; Shiqiang Tao; Olivier Bodenreider; Licong Cui (IEEE BigData, 2014)

Epilepsy and seizure ontology: towards an epilepsy informatics infrastructure for clinical research and patient care. - Satya Sanket Sahoo; Samden D. Lhatoo; Deepak K. Gupta; Licong Cui; Meng Zhao; Catherine P. Jayapandian; Alireza Bozorgi; Guo-Qiang Zhang 001 (J. Am. Medical Informatics Assoc., 2014)

Complex epilepsy phenotype extraction from narrative clinical discharge summaries. - Licong Cui; Satya Sanket Sahoo; Samden D. Lhatoo; Gaurav Garg; Prashant Rai; Alireza Bozorgi; Guo-Qiang Zhang 001 (J. Biomed. Informatics, 2014)

Multi-topic assignment for exploratory navigation of consumer health information in NetWellness using formal concept analysis. - Licong Cui; Rong Xu; Zhihui Luo 001; Susan Wentz; Kyle Scarberry; Guo-Qiang Zhang 001 (BMC Medical Informatics Decis. Mak., 2014)

COHeRE: Cross-Ontology Hierarchical Relation Examination for Ontology Quality Assurance. - Licong Cui (AMIA, 2015)

COBE: A Conjunctive Ontology Browser and Explorer for Visualizing SNOMED CT Fragments. - Mengmeng Sun; Wei Zhu 010; Shiqiang Tao; Licong Cui; Guo-Qiang Zhang 001 (AMIA, 2015)

FEDRR: Fast, Exhaustive Detection of Redundant Hierarchical Relations in Large Biomedical Ontologies. - Guangming Xing; Licong Cui; Guo-Qiang Zhang 001 (BDM2I@ISWC, 2015)

ODaCCI: Ontology-guided Data Curation for Multisite Clinical Research Data Integration in the NINDS Center for SUDEP Research. - Licong Cui; Yan Huang 034; Shiqiang Tao; Samden D. Lhatoo; Guo-Qiang Zhang 001 (AMIA, 2016)

DCDS: A Real-time Data Capture and Personalized Decision Support System for Heart Failure Patients in Skilled Nursing Facilities. - Wei Zhu 010; Lingyun Luo; Tarun Jain; Rebecca S. Boxer; Licong Cui; Guo-Qiang Zhang 001 (AMIA, 2016)

FEDRR: fast, exhaustive detection of redundant hierarchical relations for quality improvement of large biomedical ontologies. - Guangming Xing; Guo-Qiang Zhang 001; Licong Cui (BioData Min., 2016)

Biomedical Ontology Quality Assurance Using a Big Data Approach. - Licong Cui; Shiqiang Tao; Guo-Qiang Zhang 001 (ACM Trans. Knowl. Discov. Data, 2016)

Can SNOMED CT Changes Be Used as a Surrogate Standard for Evaluating the Performance of Its Auditing Methods? - Guo-Qiang Zhang 001; Yan Huang 034; Licong Cui (AMIA, 2017)

Quality Assurance of NCI Thesaurus by Mining Structural-Lexical Patterns. - Rashmie Abeysinghe; Michael A. Brooks; Jeffery C. Talbert; Licong Cui (AMIA, 2017)

SpindleSphere: A Web-based Platform for Large-scale Sleep Spindle Analysis and Visualization. - Xiaojin Li; Licong Cui; Shiqiang Tao; Ningzhou Zeng; Guo-Qiang Zhang 001 (AMIA, 2017)

Facilitating Cohort Discovery by Enhancing Ontology Exploration, Query Management and Query Sharing for Large Clinical Data Repositories. - Shiqiang Tao; Licong Cui; Xi Wu; Guo-Qiang Zhang 001 (AMIA, 2017)

Spark-MCA: Large-scale, Exhaustive Formal Concept Analysis for Evaluating the Semantic Completeness of SNOMED CT. - Wei Zhu 010; Guo-Qiang Zhang 001; Licong Cui (AMIA, 2017)

Query-constraint-based association rule mining from diverse clinical datasets in the national sleep research resource. - Rashmie Abeysinghe; Licong Cui (BIBM, 2017)

Auditing subtype inconsistencies among gene ontology concepts. - Rashmie Abeysinghe; Eugene W. Hinderer; Hunter N. B. Moseley; Licong Cui (BIBM, 2017)

Evaluation of relational and NoSQL approaches for patient cohort identification from heterogeneous data sources. - Ningzhou Zeng; Guo-Qiang Zhang 001; Xiaojin Li; Licong Cui (BIBM, 2017)

A Data Capture Framework for Large-scale Interventional Studies with Survey Workflow Management. - Shiqiang Tao; Ningzhou Zeng; Xi Wu; Wei Zhu 010; Xiaojin Li; Licong Cui; Guo-Qiang Zhang 001 (CRI, 2017)

Mining non-lattice subgraphs for detecting missing hierarchical relations and concepts in SNOMED CT. - Licong Cui; Wei Zhu 010; Shiqiang Tao; James T. Case; Olivier Bodenreider; Guo-Qiang Zhang 001 (J. Am. Medical Informatics Assoc., 2017)

Identifying Similar Non-Lattice Subgraphs in Gene Ontology based on Structural Isomorphism and Semantic Similarity of Concept Labels. - Rashmie Abeysinghe; Xufeng Qu; Licong Cui (AMIA, 2018)

A Cross-Cohort Query System for the National Sleep Research Resource (NSRR). - Licong Cui; Guo-Qiang Zhang 001 (AMIA, 2018)

A Lexical Approach to Identifying Subtype Inconsistencies in Biomedical Terminologies. - Rashmie Abeysinghe; Fengbo Zheng; Eugene W. Hinderer; Hunter N. B. Moseley; Licong Cui (BIBM, 2018)

Exploring Deep Learning-based Approaches for Predicting Concept Names in SNOMED CT. - Fengbo Zheng; Licong Cui (BIBM, 2018)

The National Sleep Research Resource: towards a sleep data commons. - Guo-Qiang Zhang 001; Licong Cui; Remo Mueller; Shiqiang Tao; Matthew Kim; Michael Rueschman; Sara Mariani; Daniel R. Mobley; Susan Redline (J. Am. Medical Informatics Assoc., 2018)

An efficient, large-scale, non-lattice-detection algorithm for exhaustive structural auditing of biomedical ontologies. - Guo-Qiang Zhang 001; Guangming Xing; Licong Cui (J. Biomed. Informatics, 2018)

Auditing SNOMED CT hierarchical relations based on lexical features of concepts in non-lattice subgraphs. - Licong Cui; Olivier Bodenreider; Jay Shi; Guo-Qiang Zhang 001 (J. Biomed. Informatics, 2018)

Quality assurance of biomedical terminologies and ontologies. - James Geller; Yehoshua Perl; Licong Cui; Guo-Qiang Zhang 001 (J. Biomed. Informatics, 2018)

Query-constraint-based mining of association rules for exploratory analysis of clinical datasets in the National Sleep Research Resource. - Rashmie Abeysinghe; Licong Cui (BMC Medical Informatics Decis. Mak., 2018)

X-search: an open access interface for cross-cohort exploration of the National Sleep Research Resource. - Licong Cui; Ningzhou Zeng; Matthew Kim; Remo Mueller; Emily R. Hankosky; Susan Redline; Guo-Qiang Zhang 001 (BMC Medical Informatics Decis. Mak., 2018)

HyCLASSS: A Hybrid Classifier for Automatic Sleep Stage Scoring. - Xiaojin Li; Licong Cui; Shiqiang Tao; Jing Chen 002; Xiang Zhang 001; Guo-Qiang Zhang 001 (IEEE J. Biomed. Health Informatics, 2018)

Leveraging Non-lattice Subgraphs to Audit Hierarchical Relations in NCI Thesaurus. - Rashmie Abeysinghe; Michael A. Brooks; Licong Cui (AMIA, 2019)

Discriminative Sleep Patterns of Alzheimer's Disease via Tensor Factorization. - Yejin Kim 001; Xiaoqian Jiang; Luyao Chen; Xiaojin Li; Licong Cui (AMIA, 2019)

SeizureBank: A Repository of Analysis-ready Seizure Signal Data. - Xiaojin Li; Yan Huang 034; Shiqiang Tao; Licong Cui; Samden D. Lhatoo; Guo-Qiang Zhang 001 (AMIA, 2019)

Ontology of Consumer Health Vocabulary: providing a formal and interoperable semantic resource for linking lay language and medical terminology. - Muhammad Amith; Licong Cui; Kirk Roberts; Hua Xu 001; Cui Tao (BIBM, 2019)

Hadoop-EDF: Large-scale Distributed Processing of Electrophysiological Signal Data in Hadoop MapReduce. - Yuanyuan Wu; Xiaojin Li; Jinze Liu; Licong Cui (BIBM, 2019)

A Hybrid Method to Detect Missing Hierarchical Relations in NCI Thesaurus. - Fengbo Zheng; Rashmie Abeysinghe; Licong Cui (BIBM, 2019)

Pattern-based Extraction of Disease Drug Combination Knowledge from Biomedical Literature. - Jing Liu; Rashmie Abeysinghe; Fengbo Zheng; Licong Cui (ICHI, 2019)

Validating Auto-Suggested Changes for SNOMED CT in Non-Lattice Subgraphs Using Relational Machine Learning. - Qi Sun; Guo-Qiang Zhang 001; Wei Zhu 010; Licong Cui (MedInfo, 2019)

An Ontology-Powered Dialogue Engine For Patient Communication of Vaccines. - Muhammad Amith; Rebecca Lin; Licong Cui; Dennis Wang; Anna Zhu; Grace Xiong; Hua Xu 001; Kirk Roberts; Cui Tao (SEPDA@ISWC, 2019)

A lexical-based approach for exhaustive detection of missing hierarchical IS-A relations in SNOMED CT. - Fengbo Zheng; Jay Shi; Licong Cui (AMIA, 2020)

HRV-Spark: Computing Heart Rate Variability Measures Using Apache Spark. - Xufeng Qu; Yuanyuan Wu; Jinze Liu; Licong Cui (BIBM, 2020)

A Lexical-based Formal Concept Analysis Method to Identify Missing Concepts in the NCI Thesaurus. - Fengbo Zheng; Licong Cui (BIBM, 2020)

SSIF: Subsumption-based Sub-term Inference Framework to audit Gene Ontology. - Rashmie Abeysinghe; Eugene W. Hinderer; Hunter N. B. Moseley; Licong Cui (Bioinform., 2020)

A transformation-based method for auditing the IS-A hierarchy of biomedical terminologies in the Unified Medical Language System. - Fengbo Zheng; Jay Shi; Yuntao Yang; W. Jim Zheng; Licong Cui (J. Am. Medical Informatics Assoc., 2020)

Quality assurance and enrichment of biological and biomedical ontologies and terminologies. - Ankur Agrawal; Licong Cui (BMC Medical Informatics Decis. Mak., 2020)

Conversational ontology operator: patient-centric vaccine dialogue management engine for spoken conversational agents. - Muhammad Amith; Rebecca Lin; Licong Cui; Dennis Wang; Anna Zhu; Grace Xiong; Hua Xu 001; Kirk Roberts; Cui Tao (BMC Medical Informatics Decis. Mak., 2020)

A community effort for automatic detection of postictal generalized EEG suppression in epilepsy. - Yejin Kim 001; Xiaoqian Jiang; Samden D. Lhatoo; Guoqiang Zhang 001; Shiqiang Tao; Licong Cui; Xiaojin Li; Robert D. Jolly; Luyao Chen; Michael Phan; Cung Ha; Marijane Detranaltes; et al. (BMC Medical Informatics Decis. Mak., 2020)

Web-based interactive mapping from data dictionaries to ontologies, with an application to cancer registry. - Shiqiang Tao; Ningzhou Zeng; Isaac Hands; Joseph Hurt-Mueller; Eric B. Durbin; Licong Cui; Guo-Qiang Zhang 001 (BMC Medical Informatics Decis. Mak., 2020)

Learning to detect the onset of slow activity after a generalized tonic-clonic seizure. - Carroll Vance; Yejin Kim 001; Guo-Qiang Zhang 001; Samden D. Lhatoo; Shiqiang Tao; Licong Cui; Xiaojin Li; Xiaoqian Jiang (BMC Medical Informatics Decis. Mak., 2020)

Detecting missing IS-A relations in the NCI Thesaurus using an enhanced hybrid approach. - Fengbo Zheng; Rashmie Abeysinghe; Nicholas Sioutos; Lori Whiteman; Lyubov Remennik; Licong Cui (BMC Medical Informatics Decis. Mak., 2020)

Ontologies as nested facet systems for human-data interaction. - Guoqiang Zhang 001; Shiqiang Tao; Ningzhou Zeng; Licong Cui (Semantic Web, 2020)

A Comparison of Exhaustive and Non-lattice-based Methods for Auditing Hierarchical Relations in Gene Ontology. - Rashmie Abeysinghe; Fengbo Zheng; Licong Cui (AMIA, 2021)

Identifying Sleep-Related Factors Associated with Cognitive Function in a Hispanics/Latinos Cohort: A Dual Random Forest Approach. - Xiaojin Li; Licong Cui; Fei Wang; Paul E. Schulz; Guo-Qiang Zhang 001 (AMIA, 2021)

Leveraging non-lattice subgraphs for suggestion of new concepts for SNOMED CT. - Xubing Hao; Rashmie Abeysinghe; Fengbo Zheng; Licong Cui (BIBM, 2021)

Identification of missing concepts in biomedical terminologies using sequence-based formal concept analysis. - Fengbo Zheng; Rashmie Abeysinghe; Licong Cui (BMC Medical Informatics Decis. Mak., 2021)

Temporal Cohort Logic. - Guo-Qiang Zhang 001; Xiaojin Li; Yan Huang 034; Licong Cui (AMIA, 2022)

Automated Identification of Missing IS-A Relations in the Human Phenotype Ontology. - Maryamsadat Mohtashamian; Ran Hu; Rashmie Abeysinghe; Xubing Hao; Hua Xu 001; Licong Cui (AMIA, 2022)

A substring replacement approach for identifying missing IS-A relations in SNOMED CT. - Xubing Hao; Rashmie Abeysinghe; Jay Shi; Licong Cui (BIBM, 2022)

Identifying Missing IS-A Relations in Orphanet Rare Disease Ontology. - Maryamsadat Mohtashamian; Rashmie Abeysinghe; Xubing Hao; Licong Cui (BIBM, 2022)

An evidence-based lexical pattern approach for quality assurance of Gene Ontology relations. - Rashmie Abeysinghe; Yuntao Yang; Mason Bartels; W. Jim Zheng; Licong Cui (Briefings Bioinform., 2022)

Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs. - Warren Manuel; Rashmie Abeysinghe; Yongqun He; Cui Tao; Licong Cui (J. Biomed. Semant., 2022)

Toward a standard formal semantic representation of the model card report. - Muhammad Tuan Amith; Licong Cui; Degui Zhi; Kirk Roberts; Xiaoqian Jiang; Fang Li 011; Evan Yu; Cui Tao (BMC Bioinform., 2022)

A multimodal clinical data resource for personalized risk assessment of sudden unexpected death in epilepsy. - Xiaojin Li; Shiqiang Tao; Samden D. Lhatoo; Licong Cui; Yan Huang 034; Johnson P. Hampson; Guo-Qiang Zhang 001 (Frontiers Big Data, 2022)

Towards quality improvement of vaccine concept mappings in the OMOP vocabulary with a semi-automated method. - Rashmie Abeysinghe; Adam Black; Denys Kaduk; Yupeng Li; Christian Reich; Alexander Davydov; Lixia Yao; Licong Cui (J. Biomed. Informatics, 2022)

A hybrid unsupervised and supervised learning approach for postictal generalized EEG suppression detection. - Xiaojin Li; Yan Huang 034; Samden D. Lhatoo; Shiqiang Tao; Laura Vilella Bertran; Guo-Qiang Zhang 001; Licong Cui (Frontiers Neuroinformatics, 2022)

Application of an ontology for model cards to generate computable artifacts for linking machine learning information from biomedical research. - Muhammad Amith; Licong Cui; Kirk Roberts; Cui Tao (WWW (Companion Volume), 2023)

A deep learning approach to identify missing is-a relations in SNOMED CT. - Rashmie Abeysinghe; Fengbo Zheng; Elmer V. Bernstam; Jay Shi; Olivier Bodenreider; Licong Cui (J. Am. Medical Informatics Assoc., 2023)

Special supplement issue on quality assurance and enrichment of biological and biomedical ontologies and terminologies. - Licong Cui; Ankur Agrawal (BMC Medical Informatics Decis. Mak., 2023)

Logical definition-based identification of potential missing concepts in SNOMED CT. - Xubing Hao; Rashmie Abeysinghe; Kirk Roberts; Licong Cui (BMC Medical Informatics Decis. Mak., 2023)

An ontology-based approach for harmonization and cross-cohort query of Alzheimer's disease data resources. - Xubing Hao; Xiaojin Li; Guo-Qiang Zhang 001; Cui Tao; Paul E. Schulz; Licong Cui (BMC Medical Informatics Decis. Mak., 2023)

Exploring Pre-trained Language Models for Vocabulary Alignment in the UMLS. - Xubing Hao; Rashmie Abeysinghe; Jay Shi; Licong Cui (AIME (1), 2024)

Analyzing Llama 3-based Approach for Axiom Translation from Ontologies. - Xubing Hao; Licong Cui; Cui Tao; Kirk Roberts; Muhammad Amith (KBC-LM/LM-KBC@ISWC, 2024)

A Comparative Study of Recent Large Language Models on Generating Hospital Discharge Summaries for Lung Cancer Patients. - Yiming Li; Fang Li 011; Kirk Roberts; Licong Cui; Cui Tao; Hua Xu 001 (CoRR, 2024)

CDEMapper: Enhancing NIH Common Data Element Normalization using Large Language Models. - Yan Wang; Jimin Huang; Huan He; Vincent J. Zhang; Yujia Zhou 003; Xubing Hao; Pritham Ram; Lingfei Qian; Qianqian Xie; Ruey-Ling Weng; Fongci Lin; Yan Hu; et al. (CoRR, 2024)

Leveraging logical definitions and lexical features to detect missing IS-A relations in biomedical terminologies. - Rashmie Abeysinghe; Fengbo Zheng; Jay Shi; Samden D. Lhatoo; Licong Cui (J. Biomed. Semant., 2024)

Mapping of Alzheimer's disease related data elements and the NIH Common Data Elements. - Xubing Hao; Rashmie Abeysinghe; Fengbo Zheng; Paul E. Schulz; Licong Cui (BMC Medical Informatics Decis. Mak., 2024)

Identifying Developmental Intellectual Disability as a SUDEP Risk Marker from Epilepsy Monitoring Unit Reports Using Large Language Models. - Ran Hu; Rashmie Abeysinghe; Gorbachev Jowah; Shiqiang Tao; Samden D. Lhatoo; Guo-Qiang Zhang 001; Licong Cui (FLAIRS, 2025)

Designing a Narrative-Based Video Game for Adolescents Coping with a Parent's Cancer. - Sophia Hamilton; Xubing Hao; Sharon Andrews; Eveyln Roldan; Carlos Martinez; Jane Hamilton; Muhammad Tuan Amith; Licong Cui (HCI (64), 2025)

Constructing A Conversation-First Dialogue Model for Comprehensive, Evidence-Based Counseling for HPV Vaccination for Young Adults. - Lu Tang 005; Chenying Weng; Serena Hou; Lara S. Savas; Ana Neumann; Nicole Moore; Jane Hamilton; Daniel Rhee; Cui Tao; Licong Cui; Muhammad Amith (HCI (26), 2025)

Quantitatively assessing the impact of the quality of SNOMED CT subtype hierarchy on cohort queries. - Xubing Hao; Xiaojin Li; Yan Huang 034; Jay Shi; Rashmie Abeysinghe; Cui Tao; Kirk Roberts; Guo-Qiang Zhang 001; Licong Cui (J. Am. Medical Informatics Assoc., 2025)

CDEMapper: enhancing National Institutes of Health common data element use with large language models. - Yan Wang; Jimin Huang; Huan He; Vincent Zhang; Yujia Zhou 003; Xubing Hao; Pritham Ram; Lingfei Qian; Qianqian Xie; Ruey-Ling Weng; Fongci Lin; Yan Hu; et al. (J. Am. Medical Informatics Assoc., 2025)

A comparative study of recent large language models on generating hospital discharge summaries for lung cancer patients. - Yiming Li; Fang Li 011; Na Hong; Manqi Li; Kirk Roberts; Licong Cui; Cui Tao; Hua Xu 001 (J. Biomed. Informatics, 2025)

Leveraging pretrained language models for seizure frequency extraction from epilepsy evaluation reports. - Rashmie Abeysinghe; Shiqiang Tao; Samden D. Lhatoo; Guoqiang Zhang 001; Licong Cui (npj Digit. Medicine, 2025)