LOBSTER: an environment to design bioimage analysis workflows for large and complex fluorescence microscopy data. - Sébastien Tosi; Lídia Bardia; Maria Jose Filgueira; Alexandre Calon; Julien Colombelli (Bioinform., 2020)

MosaicExplorerJ: Interactive stitching of terabyte-size tiled datasets from lightsheet microscopy. - Sébastien Tosi; Lídia Bardia; Maria Jose Barallobre; Arrate Muñoz-Barrutia; María Luisa Soto-Montenegro; Julien Colombelli (F1000Research, 2020)

AutoScanJ: A Suite of ImageJ Scripts for Intelligent Microscopy. - Sébastien Tosi; Anna Lladó; Lídia Bardia; Elena Rebollo; Anna Godo; Petra Stockinger; Julien Colombelli (Frontiers Bioinform., 2021)