ANCHOR: a web server and database for analysis of protein-protein interaction binding pockets for drug discovery. - Lidio M. C. Meireles; Alexander S. Dömling; Carlos J. Camacho (Nucleic Acids Res., 2010)

ProDy: Protein Dynamics Inferred from Theory and Experiments. - Ahmet Bakan; Lidio M. C. Meireles; Ivet Bahar (Bioinform., 2011)