The use of semiparametric mixed models to analyze PamChip® peptide array data: an application to an oncology experiment. - Pushpike Jayantha Thilakarathne; Lieven Clement; Dan Lin 004; Ziv Shkedy; Adetayo Kasim; Willem Talloen; Matthias Versele; Geert Verbeke (Bioinform., 2011)

Analysis of tiling array expression studies with flexible designs in Bioconductor (waveTiling. - Kristof De Beuf; Peter Pipelers; Megan Andriankaja; Olivier Thas; Dirk Inzé; Ciprian M. Crainiceanu; Lieven Clement (BMC Bioinform., 2012)

Improved base-calling and quality scores for 454 sequencing based on a Hurdle Poisson model. - Kristof De Beuf; Joachim M. De Schrijver; Olivier Thas; Wim Van Criekinge; Rafael A. Irizarry; Lieven Clement (BMC Bioinform., 2012)

beadarrayFilter: An R Package to Filter Beads. - Chiara Forcheh Anyiawung; Geert Verbeke; Adetayo Kasim; Dan Lin 004; Ziv Shkedy; Willem Talloen; Hinrich W. H. Göhlmann; Lieven Clement (R J., 2013)

unifiedWMWqPCR: the unified Wilcoxon-Mann-Whitney test for analyzing RT-qPCR data in R. - Jan De Neve; Joris Meys; Jean-Pierre Ottoy; Lieven Clement; Olivier Thas (Bioinform., 2014)

Impact of variance components on reliability of absolute quantification using digital PCR. - Bart K. M. Jacobs; Els Goetghebeur; Lieven Clement (BMC Bioinform., 2014)

VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering. - Bie M. P. Verbist; Kim Thys; Joke Reumers; Yves Wetzels; Koen Van der Borght; Willem Talloen; Jeroen Aerssens; Lieven Clement; Olivier Thas (Bioinform., 2015)

QQ-SNV: single nucleotide variant detection at low frequency by comparing the quality quantiles. - Koen Van der Borght; Kim Thys; Yves Wetzels; Lieven Clement; Bie M. P. Verbist; Joke Reumers; Herman van Vlijmen; Jeroen Aerssens (BMC Bioinform., 2015)

ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering. - Bie M. P. Verbist; Lieven Clement; Joke Reumers; Kim Thys; Alexander Vapirev; Willem Talloen; Yves Wetzels; Joris Meys; Jeroen Aerssens; Luc Bijnens; Olivier Thas (BMC Bioinform., 2015)

Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations. - Bart Broeckx; Luc Peelman; Jimmy Saunders; Dieter Deforce; Lieven Clement (BMC Bioinform., 2017)