Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis. - Pan Du 004; Xiao Zhang; Chiang-Ching Huang; Nadereh Jafari; Warren A. Kibbe; Lifang Hou; Simon M. Lin (BMC Bioinform., 2010)

A-clustering: a novel method for the detection of co-regulated methylation regions, and regions associated with exposure. - Tamar Sofer; Elizabeth D. Schifano; Jane A. Hoppin; Lifang Hou; Andrea A. Baccarelli (Bioinform., 2013)

PGS: a tool for association study of high-dimensional microRNA expression data with repeated measures. - Yinan Zheng; Zhe Fei; Wei Zhang 253; Justin B. Starren; Lei Liu 004; Andrea A. Baccarelli; Yi Li; Lifang Hou (Bioinform., 2014)

CpGFilter: model-based CpG probe filtering with replicates for epigenome-wide association studies. - Jun Chen; Allan C. Just; Joel Schwartz; Lifang Hou; Nadereh Jafari; Zhifu Sun; Jean-Pierre A. Kocher; Andrea A. Baccarelli; Xihong Lin (Bioinform., 2016)

Estimating and testing high-dimensional mediation effects in epigenetic studies. - Haixiang Zhang; Yinan Zheng; Zhou Zhang 002; Tao Gao; Brian Joyce; Grace Yoon; Wei Zhang 253; Joel Schwartz; Allan C. Just; Elena Colicino; Pantel Vokonas; Lihui Zhao; et al. (Bioinform., 2016)

Ultra-high dimensional variable selection with application to normative aging study: DNA methylation and metabolic syndrome. - Grace Yoon; Yinan Zheng; Zhou Zhang 002; Haixiang Zhang; Tao Gao; Brian Joyce; Wei Zhang 253; Weihua Guan; Andrea A. Baccarelli; Wenxin Jiang 003; Joel Schwartz; Pantel Vokonas; et al. (BMC Bioinform., 2017)

Mediation analysis for survival data with high-dimensional mediators. - Haixiang Zhang; Yinan Zheng; Lifang Hou; Cheng Zheng 005; Lei Liu 004 (Bioinform., 2021)

HIMA2: high-dimensional mediation analysis and its application in epigenome-wide DNA methylation data. - Chamila Perera; Haixiang Zhang; Yinan Zheng; Lifang Hou; Annie Qu; Cheng Zheng 005; Ke Xie 009; Lei Liu 004 (BMC Bioinform., 2022)

High-dimensional quantile mediation analysis with application to a birth cohort study of mother-newborn pairs. - Haixiang Zhang; Xiumei Hong; Yinan Zheng; Lifang Hou; Cheng Zheng 005; Xiaobin Wang; Lei Liu 004 (Bioinform., 2024)

Disentangling User Cognitive Intent with Causal Reasoning for Knowledge-Enhanced Recommendation. - Hongcai Xu; Junpeng Bao; Qika Lin; Lifang Hou; Feng Chen (Cogn. Comput., 2024)

High-dimensional mediation analysis for longitudinal mediators and survival outcomes. - Lili Liu; Haixiang Zhang; Yinan Zheng; Tao Gao; Cheng Zheng 005; Kai Zhang; Lifang Hou; Lei Liu 004 (Briefings Bioinform., 2025)

A statistical framework for multi-trait rare variant analysis in large-scale whole-genome sequencing studies. - Xihao Li; Han Chen; Margaret Sunitha Selvaraj; Eric Van Buren; Hufeng Zhou; Yuxuan Wang 008; Ryan Sun; Zachary R. McCaw; Zhi Yu; Min-Zhi Jiang; Daniel DiCorpo; Sheila M. Gaynor; et al. (Nat. Comput. Sci., 2025)