RSeQC: quality control of RNA-seq experiments. - Liguo Wang 002; Shengqin Wang; Wei Li (Bioinform., 2012)

CrossMap: a versatile tool for coordinate conversion between genome assemblies. - Hao Zhao; Zhifu Sun; Jing Wang; Haojie Huang; Jean-Pierre A. Kocher; Liguo Wang 002 (Bioinform., 2014)

HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data. - Huihuang Yan; Jared Evans; Mike Kalmbach; Raymond M. Moore; Sumit Middha; Stanislav Luban; Liguo Wang 002; Aditya Bhagwate; Ying Li; Zhifu Sun; Xianfeng Chen; Jean-Pierre A. Kocher (BMC Bioinform., 2014)

PVAAS: identify variants associated with aberrant splicing from RNA-seq. - Liguo Wang 002; Jinfu J. Nie; Jean-Pierre A. Kocher (Bioinform., 2015)

Measure transcript integrity using RNA-seq data. - Liguo Wang 002; Jinfu J. Nie; Hugues Sicotte; Ying Li; Jeanette E. Eckel-Passow; Surendra Dasari; Peter T. Vedell; Poulami Barman; Liewei Wang; Richard Weinshiboum; Jin Jen; Haojie Huang; et al. (BMC Bioinform., 2016)

CircularLogo: A lightweight web application to visualize intra-motif dependencies. - Zhenqing Ye; Tao Ma; Michael Kalmbach; Surendra Dasari; Jean-Pierre A. Kocher; Liguo Wang 002 (BMC Bioinform., 2017)

Characterization and identification of long non-coding RNAs based on feature relationship. - Guangyu Wang; Hongyan Yin; Boyang Li 011; Chunlei Yu; Fan Wang; Xingjian Xu; Jiabao Cao; Yiming Bao; Liguo Wang 002; Amir Ali Abbasi; Vladimir B. Bajic; Lina Ma; et al. (Bioinform., 2019)

CpGtools: a python package for DNA methylation analysis. - Ting Wei; Jinfu J. Nie; Nicholas B. Larson; Zhenqing Ye; Jeanette E. Eckel-Passow; Keith D. Robertson; Jean-Pierre A. Kocher; Liguo Wang 002 (Bioinform., 2021)

Reference-guided search for open reading frames. - Liguo Wang 002 (Nat. Comput. Sci., 2023)

Publisher Correction: Reference-guided search for open reading frames. - Liguo Wang 002 (Nat. Comput. Sci., 2023)

Identify Non-mutational p53 Functional Deficiency in Human Cancers. - Qianpeng Li; Yang Zhang 042; Sicheng Luo; Zhang Zhang 002; Ann L. Oberg; David E. Kozono; Hua Lu 019; Jann N. Sarkaria; Lina Ma; Liguo Wang 002 (Genom. Proteom. Bioinform., 2024)