Network of coordinated substitutions in the Hepatitis B virus polymerase. - David S. Campo; Zoya Dimitrova; James Lara; Mike Purdy; Hong Thai; Sumathi Ramachandran; Lilia Ganova-Raeva; X. Zhai; Joseph C. Forbi; Chong-Gee Teo; Yuri Khudyakov (BIBM Workshops, 2011)

Assessments of intra- and inter-host diversity of hepatitis C virus using Next Generation Sequencing and Mass spectrometry. - Zoya Dimitrova; David S. Campo; Sumathi Ramachandran; Gilberto Vaughan; Lilia Ganova-Raeva; Yulin Lin; Joseph C. Forbi; Guo-liang Xia; Pavel Skums; Brian L. Pearlman; Yuri Khudyakov (BIBM Workshops, 2011)

Workshop: A maximum likelihood method for quasispecies spectrum assembly. - Nicholas Mancuso; Bassam Tork; Pavel Skums; Lilia Ganova-Raeva; Ion I. Mandoiu; Alexander Zelikovsky (ICCABS, 2012)

Coordinated evolution of the Hepatitis B Virus Polymerase. - David S. Campo; Zoya Dimitrova; James Lara; Mike Purdy; Hong Thai; Sumathi Ramachandran; Lilia Ganova-Raeva; X. Zhai; Joseph C. Forbi; Chong-Gee Teo; Yuri Khudyakov (Silico Biol., 2012)

Evaluation of viral heterogeneity using next-generation sequencing, end-point limiting-dilution and mass spectrometry. - Zoya Dimitrova; David S. Campo; Sumathi Ramachandran; Gilberto Vaughan; Lilia Ganova-Raeva; Yulin Lin; Joseph C. Forbi; Guo-liang Xia; Pavel Skums; Brian L. Pearlman; Yuri Khudyakov (Silico Biol., 2012)

Reconstructing viral quasispecies from NGS amplicon reads. - Nicholas Mancuso; Bassam Tork; Pavel Skums; Lilia Ganova-Raeva; Ion I. Mandoiu; Alex Zelikovsky (Silico Biol., 2012)

Alignment of DNA Mass-Spectral Profiles Using Network Flows. - Pavel Skums; Olga Glebova; Alex Zelikovsky; Zoya Dimitrova; David Stiven Campo Rendon; Lilia Ganova-Raeva; Yuri Khudyakov (ISBRA, 2013)

New computational methods for assessing the genetic relatedness of close viral variants. - David S. Campo; Zoya Dimitrova; Guo-liang Xia; Pavel Skums; Lilia Ganova-Raeva; Yuri Khudyakov (ICCABS, 2014)

Modeling the functional state of the reverse transcriptase of hepatitis B virus and its application to probing drug-protein interaction. - Xiaojun Xu; Hong Thai; Kathryn M. Kitrinos; Guo-liang Xia; Anuj Gaggar; Matthew Paulson; Lilia Ganova-Raeva; Yury Khudyakov; James Lara (BMC Bioinform., 2016)

Automated quality control for a molecular surveillance system. - Seth Sims; Atkinson G. Longmire; David S. Campo; Sumathi Ramachandran; Magdalena Medrzycki; Lilia Ganova-Raeva; Yulin Lin; Amanda Sue; Hong Thai; Alexander Zelikovsky; Yury Khudyakov (BMC Bioinform., 2018)