KEGGParser: parsing and editing KEGG pathway maps in Matlab. - Arsen Arakelyan; Lilit Nersisyan (Bioinform., 2013)

Gene Set- and Pathway- Centered Knowledge Discovery Assigns Transcriptional Activation Patterns in Brain, Blood, and Colon Cancer: A Bioinformatics Perspective. - Lilit Nersisyan; Henry Löffler-Wirth; Arsen Arakelyan; Hans Binder (Int. J. Knowl. Discov. Bioinform., 2014)

PSFC: a Pathway Signal Flow Calculator App for Cytoscape. - Lilit Nersisyan; Graham Johnson; Megan Riel-Mehan; Alexander R. Pico; Arsen Arakelyan (F1000Research, 2015)

Quantitative trait association study for mean telomere length in the South Asian genomes. - Anna Hakobyan; Lilit Nersisyan; Arsen Arakelyan (Bioinform., 2016)

Telomere analysis based on high-throughput multi-omics data - Lilit Nersisyan (2017)

BioRelEx 1.0: Biological Relation Extraction Benchmark. - Hrant Khachatrian; Lilit Nersisyan; Karen Hambardzumyan; Tigran Galstyan; Anna Hakobyan; Arsen Arakelyan; Andrey Rzhetsky; Aram Galstyan (BioNLP@ACL, 2019)