2D-3D Rigid Registration of X-Ray Fluoroscopy and CT Images Using Mutual Information and Sparsely Sampled Histogram Estimators. - Lilla Zöllei; W. Eric L. Grimson; Alexander Norbash; William M. Wells III (CVPR (2), 2001)

A Unified Statistical and Information Theoretic Framework for Multi-modal Image Registration. - Lilla Zöllei; John W. Fisher III; William M. Wells III (IPMI, 2003)

Exploratory Identification of Cardiac Noise in fMRI Images. - Lilla Zöllei; Lawrence P. Panych; W. Eric L. Grimson; William M. Wells III (MICCAI (1), 2003)

A variational framework for integrating segmentation and registration through active contours. - Anthony J. Yezzi; Lilla Zöllei; Tina Kapur (Medical Image Anal., 2003)

Efficient Population Registration of 3D Data. - Lilla Zöllei; Erik G. Learned-Miller; W. Eric L. Grimson; William M. Wells III (CVBIA, 2005)

Multi-modal Image Registration Using Dirichlet-Encoded Prior Information. - Lilla Zöllei; William M. Wells III (WBIR, 2006)

A unified information theoretic framework for pair- and group-wise registration of medical images. - Lilla Zöllei (2006)

Geometry Driven Volumetric Registration. - Gheorghe Postelnicu; Lilla Zöllei; Rahul Desikan; Bruce Fischl (IPMI, 2007)

A Marginalized MAP Approach and EM Optimization for Pair-Wise Registration. - Lilla Zöllei; Mark Jenkinson; Samson J. Timoner; William M. Wells III (IPMI, 2007)

Displacement of brain regions in preterm infants with non-synostotic dolichocephaly investigated by MRI. - Andrea J. U. Mewes; Lilla Zöllei; Petra S. Hüppi; Heidelise Als; Gloria B. McAnulty; Terrie E. Inder; William M. Wells III; Simon K. Warfield (NeuroImage, 2007)

Modeling of anatomical information in clustering of white matter fiber trajectories using Dirichlet distribution. - Mahnaz Maddah; Lilla Zöllei; W. Eric L. Grimson; William M. Wells III (CVPR Workshops, 2008)

A mathematical framework for incorporating anatomical knowledge in DT-MRI analysis. - Mahnaz Maddah; Lilla Zöllei; W. Eric L. Grimson; Carl-Fredrik Westin; William M. Wells III (ISBI, 2008)

On the optimality of mutual information as an image registration objective function. - Lilla Zöllei; William M. Wells III (ICIP, 2009)

Anatomical Priors for Global Probabilistic Diffusion Tractography. - Anastasia Yendiki; Allison Stevens; Jean Augustinack; David H. Salat; Lilla Zöllei; Bruce Fischl (ISBI, 2009)

Combined Volumetric and Surface Registration. - Gheorghe Postelnicu; Lilla Zöllei; Bruce Fischl (IEEE Trans. Medical Imaging, 2009)

Improved tractography alignment using combined volumetric and surface registration. - Lilla Zöllei; Allison Stevens; Kristen Huber; Sita Kakunoori; Bruce Fischl (NeuroImage, 2010)

Evaluating Volumetric Brain Registration Performance Using Structural Connectivity Information. - Aleksandar Petrovic; Lilla Zöllei (MICCAI (2), 2011)

Automated Probabilistic Reconstruction of White-Matter Pathways in Health and Disease Using an Atlas of the Underlying Anatomy. - Anastasia Yendiki; Patricia Panneck; Priti Srinivasan; Allison Stevens; Lilla Zöllei; Jean Augustinack; Ruopeng Wang; David H. Salat; Stefan Ehrlich; Tim E. J. Behrens; Saâd Jbabdi; Randy L. Gollub; et al. (Frontiers Neuroinformatics, 2011)

A Feature-Based Developmental Model of the Infant Brain in Structural MRI. - Matthew Toews; William M. Wells III; Lilla Zöllei (MICCAI (2), 2012)

Feature-Based Alignment of Volumetric Multi-modal Images. - Matthew Toews; Lilla Zöllei; William M. Wells III (IPMI, 2013)

Radial and tangential neuronal migration pathways in the human fetal brain: Anatomically distinct patterns of diffusion MRI coherence. - James Kolasinski; Emi Takahashi; Allison Stevens; Thomas Benner; Bruce Fischl; Lilla Zöllei; Patricia Ellen Grant (NeuroImage, 2013)

A Locally Linear Method for Enforcing Temporal Smoothness in Serial Image Registration. - Ernst Schwartz; András Jakab; Gregor Kasprian; Lilla Zöllei; Georg Langs (STIA, 2014)

Brain extraction in pediatric ADC maps, toward characterizing neuro-development in multi-platform and multi-institution clinical images. - Yangming Ou; Randy L. Gollub; Kallirroi Retzepi; Nathaniel Reynolds; Rudolph Pienaar; Steve Pieper 001; Shawn N. Murphy; Patricia Ellen Grant; Lilla Zöllei (NeuroImage, 2015)

Multimodal Whole Brain Registration: MRI and High Resolution Histology. - Maryana Alegro; Edson Amaro Júnior; Burlen Loring; Helmut Heinsen; Eduardo Alho; Lilla Zöllei; Daniela Ushizima; Lea T. Grinberg (CVPR Workshops, 2016)

Field of View Normalization in Multi-Site Brain MRI. - Yangming Ou; Lilla Zöllei; Xiao Da; Kallirroi Retzepi; Shawn N. Murphy; Elizabeth R. Gerstner; Bruce R. Rosen; Patricia Ellen Grant; Jayashree Kalpathy-Cramer; Randy L. Gollub (Neuroinformatics, 2018)

Fast Infant MRI Skullstripping with Multiview 2D Convolutional Neural Networks. - Amod Jog; Patricia Ellen Grant; Joseph L. Jacobson; André J. W. van der Kouwe; Ernesta M. Meintjes; Bruce Fischl; Lilla Zöllei (CoRR, 2019)

Automating Whole Brain Histology to MRI Registration: Implementation of a Computational Pipeline. - Maryana Alegro; Eduardo J. L. Alho; Maria da Graça Morais Martin; Lea Tenenholz Grinberg; Helmut Heinsen; Roseli de Deus Lopes; Edson Amaro Jr.; Lilla Zöllei (CoRR, 2019)

Representational similarity precedes category selectivity in the developing ventral visual pathway. - Michael A. Cohen; Daniel D. Dilks; Kami Koldewyn; Sarah Weigelt; Jenelle Feather; Alexander J. E. Kell; Boris Keil; Bruce Fischl; Lilla Zöllei; Lawrence L. Wald; Rebecca Saxe; Nancy Kanwisher (NeuroImage, 2019)

TRActs constrained by UnderLying INfant anatomy (TRACULInA): An automated probabilistic tractography tool with anatomical priors for use in the newborn brain. - Lilla Zöllei; Camilo Jaimes; Elie Saliba; Patricia Ellen Grant; Anastasia Yendiki (NeuroImage, 2019)

Unbiased Atlas Construction for Neonatal Cortical Surfaces via Unsupervised Learning. - Jieyu Cheng; Adrian V. Dalca; Lilla Zöllei (ASMUS/PIPPI@MICCAI, 2020)

Cortical surface registration using unsupervised learning. - Jieyu Cheng; Adrian V. Dalca; Bruce Fischl; Lilla Zöllei (CoRR, 2020)

Cortical surface registration using unsupervised learning. - Jieyu Cheng; Adrian V. Dalca; Bruce Fischl; Lilla Zöllei; Alzheimer's Disease Neuroimaging Initiative (NeuroImage, 2020)

Relating anthropometric indicators to brain structure in 2-month-old Bangladeshi infants growing up in poverty: A pilot study. - Ted Turesky; Wanze Xie; Swapna Kumar; Danielle D. Sliva; Borjan A. Gagoski; Jennifer Vaughn; Lilla Zöllei; Rashidul Haque; Shahria Hafiz Kakon; Nazrul Islam; William A. Petri Jr.; Charles A. Nelson; et al. (NeuroImage, 2020)

Infant FreeSurfer: An automated segmentation and surface extraction pipeline for T1-weighted neuroimaging data of infants 0-2 years. - Lilla Zöllei; Juan Eugenio Iglesias; Yangming Ou; Patricia Ellen Grant; Bruce Fischl (NeuroImage, 2020)

Quantification of volumetric morphometry and optical property in the cortex of human cerebellum at micrometer resolution. - Chao J. Liu; William Ammon; Viviana Siless; Morgan Fogarty; Ruopeng Wang; Alessia Atzeni; Iman Aganj; Juan Eugenio Iglesias; Lilla Zöllei; Bruce Fischl; Jeremy D. Schmahmann; Hui Wang 060 (NeuroImage, 2021)

VINNA for Neonates - Orientation Independence through Latent Augmentations. - Leonie Henschel; David Kügler; Lilla Zöllei; Martin Reuter 001 (CoRR, 2023)

Boosting Skull-Stripping Performance for Pediatric Brain Images. - William Kelley; Nathan Ngo; Adrian V. Dalca; Bruce Fischl; Lilla Zöllei; Malte Hoffmann (ISBI, 2024)

Search Wide, Focus Deep: Automated Fetal Brain Extraction with Sparse Training Data. - Javid Dadashkarimi; Valeria Pena Trujillo; Camilo Jaimes; Lilla Zöllei; Malte Hoffmann (CoRR, 2024)