Inference Rules in Object Oriented Programminh Systems. - Limsoon Wong (DOOD, 1989)

Treating Failure As Value. - Limsoon Wong; Beng Chin Ooi (ACM SIGPLAN Notices, 1990)

Treating failure as state. - Limsoon Wong; Beng Chin Ooi (ACM SIGPLAN Notices, 1990)

On Canonical and Non-canonical Classifications. - Anne H. H. Ngu; Limsoon Wong; Surjatini Widjojo (DOOD, 1991)

Naturally Embedded Query Languages. - Val Tannen; Peter Buneman; Limsoon Wong (ICDT, 1992)

PINOL: A Persistent Inferential Object Oriented Language for Databases. - Anne H. H. Ngu; Limsoon Wong (DASFAA, 1993)

Heterogeneous Query Optimization Using Maximal Sub-Queries. - Anne H. H. Ngu; Ling-Ling Yan; Limsoon Wong (DASFAA, 1993)

Some Properties of Query Languages for Bags. - Leonid Libkin; Limsoon Wong (DBPL, 1993)

Aggregate Functions, Conservative Extensions, and Linear Orders. - Leonid Libkin; Limsoon Wong (DBPL, 1993)

Semantic Representations and Query Languages for Or-sets. - Leonid Libkin; Limsoon Wong (PODS, 1993)

Normal Forms and Conservative Properties for Query Languages over Collection Types. - Limsoon Wong (PODS, 1993)

New Techniques for Studying Set Languages, Bag Languages and Aggregate Functions. - Leonid Libkin; Limsoon Wong (PODS, 1994)

Conservativity of Nested Relational Calculi with Internal Generic Functions. - Leonid Libkin; Limsoon Wong (Inf. Process. Lett., 1994)

Comprehension Syntax. - Peter Buneman; Leonid Libkin; Dan Suciu; Val Tannen; Limsoon Wong (SIGMOD Rec., 1994)

Querying Nested Collections. - Limsoon Wong (1994)

On Impossibility of Decremental Recomputation of Recursive Queries in Relational Calculus and SQL. - Guozhu Dong; Leonid Libkin; Limsoon Wong (DBPL, 1995)

On Two Forms of Structural Recursion. - Dan Suciu; Limsoon Wong (ICDT, 1995)

A Data Transformation System for Biological Data Sources. - Peter Buneman; Susan B. Davidson; Kyle Hart; G. Christian Overton; Limsoon Wong (VLDB, 1995)

On Representation and Querying Incomplete Information in Databases with Bags. - Leonid Libkin; Limsoon Wong (Inf. Process. Lett., 1995)

An Introduction to Remy's Fast Polymorphic Record Projection. - Limsoon Wong (SIGMOD Rec., 1995)

Polymorphic Queries Across Sets, Bags, and Lists. - Limsoon Wong (ACM SIGPLAN Notices, 1995)

Principles of Programming with Complex Objects and Collection Types. - Peter Buneman; Shamim A. Naqvi; Val Tannen; Limsoon Wong (Theor. Comput. Sci., 1995)

QUICK: Graphical User Interface to Multiple Databases. - Wang Chiew Tan; Ke Wang; Limsoon Wong (DEXA Workshop, 1996)

A Query Language for Multidimensional Arrays: Design, Implementation, and Optimization Techniques. - Leonid Libkin; Rona Machlin; Limsoon Wong (SIGMOD Conference, 1996)

Semantic Representations and Query Labguages for Or-Sets. - Leonid Libkin; Limsoon Wong (J. Comput. Syst. Sci., 1996)

Normal Forms and Conservative Extension Properties for Query Languages over Collection Types. - Limsoon Wong (J. Comput. Syst. Sci., 1996)

Query languages for bags: expressive power and complexity. - Stéphane Grumbach; Leonid Libkin; Tova Milo; Limsoon Wong (SIGACT News, 1996)

On the Power of Aggregation in Relational Query Languages. - Leonid Libkin; Limsoon Wong (DBPL, 1997)

Incremental Recomputation of Recursive Queries with Nested Sets and Aggregate Functions. - Leonid Libkin; Limsoon Wong (DBPL, 1997)

Some Relationships between the FOIES and S1 Arity Hierarchies. - Guozhu Dong; Limsoon Wong (Bull. EATCS, 1997)

Query Languages for Bags and Aggregate Functions. - Leonid Libkin; Limsoon Wong (J. Comput. Syst. Sci., 1997)

BioKleisli: A Digital Library for Biomedical Researchers. - Susan B. Davidson; G. Christian Overton; Val Tannen; Limsoon Wong (Int. J. Digit. Libr., 1997)

A Protein Patent Query System Powered By Kleisli. - Jing Chen; Limsoon Wong; Louxin Zhang (SIGMOD Conference, 1998)

Unary Quantifiers, Transitive Closure, and Relations of Large Degree. - Leonid Libkin; Limsoon Wong (STACS, 1998)

Relational Expressive Power of Constraint Query Languages. - Michael Benedikt; Guozhu Dong; Leonid Libkin; Limsoon Wong (J. ACM, 1998)

A Graphical Interface to Genome Multidatabases. - Wang Chiew Tan; Ke Wang; Limsoon Wong (J. Database Manag., 1998)

On the Power of Incremental Evaluation in SQL-Like Languages. - Leonid Libkin; Limsoon Wong (DBPL, 1999)

CAEP: Classification by Aggregating Emerging Patterns. - Guozhu Dong; Xiuzhen Zhang 001; Limsoon Wong; Jinyan Li 001 (Discovery Science, 1999)

Finitely Representable Nested Relations. - Elisa Bertino; Barbara Catania; Limsoon Wong (Inf. Process. Lett., 1999)

Kleisli, its Exchange Format, Supporting Tools, and an Application in Protein Interaction Extraction. - Limsoon Wong (BIBE, 2000)

The functional guts of the Kleisli query system. - Limsoon Wong (ICFP, 2000)

Kleisli, a functional query system. - Limsoon Wong (J. Funct. Program., 2000)

FIMM, a database of functional molecular immunology. - Christian Schönbach; Judice L. Y. Koh; Xin Sheng; Limsoon Wong; Vladimir Brusic (Nucleic Acids Res., 2000)

Local properties of query languages. - Guozhu Dong; Leonid Libkin; Limsoon Wong (Theor. Comput. Sci., 2000)

Natural Language Processing for Biology - Session Introduction. - Jun'ichi Tsujii; Limsoon Wong (Pacific Symposium on Biocomputing, 2001)

PIES, A Protein Interaction Extraction System. - Limsoon Wong (Pacific Symposium on Biocomputing, 2001)

Logics with aggregate operators. - Lauri Hella; Leonid Libkin; Juha Nurmonen; Limsoon Wong (J. ACM, 2001)

Reminiscences on Influential Papers. - Kenneth A. Ross; James R. Hamilton; Laks V. S. Lakshmanan; Limsoon Wong (SIGMOD Rec., 2001)

Mining of Correlated Rules in Genome Sequences. - Li Lin; Limsoon Wong; Tze-Yun Leong; Pohsan Lai (AMIA, 2002)

Solving the Fragmentation Problem of Decision Trees by Discovering Boundary Emerging Patterns. - Jinyan Li 001; Limsoon Wong (ICDM, 2002)

Fast Filter-and-Refine Algorithms for Subsequence Selection. - Beng Chin Ooi; HweeHwa Pang; Hao Wang; Limsoon Wong; Cui Yu (IDEAS, 2002)

Geography of Differences between Two Classes of Data. - Jinyan Li 001; Limsoon Wong (PKDD, 2002)

Literature Data Mining for Biology - Session Introduction. - Lynette Hirschman; Jong C. Park; Jun'ichi Tsujii; Cathy H. Wu; Limsoon Wong (Pacific Symposium on Biocomputing, 2002)

Accomplishments and challenges in literature data mining for biology. - Lynette Hirschman; Jong-Chan Park; Jun'ichi Tsujii; Limsoon Wong; Cathy H. Wu (Bioinform., 2002)

Identifying good diagnostic gene groups from gene expression profiles using the concept of emerging patterns. - Jinyan Li 001; Limsoon Wong (Bioinform., 2002)

FIMM, a database of functional molecular immunology: update 2002. - Christian Schönbach; Judice L. Y. Koh; Darren R. Flower; Limsoon Wong; Vladimir Brusic (Nucleic Acids Res., 2002)

Lower bounds for invariant queries in logics with counting. - Leonid Libkin; Limsoon Wong (Theor. Comput. Sci., 2002)

The Kleisli Query System as a Backbone for Bioinformatics Data Integration and Analysis. - Jing Chen; Su Yun Chung; Limsoon Wong (Bioinformatics, 2003)

From Informatics to Bioinformatics. - Vladimir B. Bajic; Vladimir Brusic; Jinyan Li 001; See-Kiong Ng; Limsoon Wong (APBC, 2003)

Discovery of significant rules for classifying cancer diagnosis data. - Jinyan Li 001; Huiqing Liu; See-Kiong Ng; Limsoon Wong (ECCB, 2003)

Bioinformatics Adventures in Database Research. - Jinyan Li 001; See-Kiong Ng; Limsoon Wong (ICDT, 2003)

Mean-entropy discretized features are effective for classifying high-dimensional biomedical data. - Jinyan Li 001; Huiqing Liu; Limsoon Wong (BIOKDD, 2003)

Using Rules to Analyse Bio-medical Data: A Comparison between C4.5 and PCL. - Jinyan Li 001; Limsoon Wong (WAIM, 2003)

Simple rules underlying gene expression profiles of more than six subtypes of acute lymphoblastic leukemia (ALL) patients. - Jinyan Li 001; Huiqing Liu; James R. Downing; Allen Eng-Juh Yeoh; Limsoon Wong (Bioinform., 2003)

Incremental recomputation in local languages. - Guozhu Dong; Leonid Libkin; Limsoon Wong (Inf. Comput., 2003)

Data Mining Tools for Biological Sequences. - Huiqing Liu; Limsoon Wong (J. Bioinform. Comput. Biol., 2003)

Use of Built-in Features in the Interpretation of High-dimensional Cancer Diagnosis Data.. - Jinyan Li 001; Huiqing Liu; Limsoon Wong (APBC, 2004)

Selection of Patient Samples and Genes for Outcome Prediction. - Huiqing Liu; Jinyan Li 001; Limsoon Wong (CSB, 2004)

Using amino acid patterns to accurately predict translation initiation sites. - Huiqing Liu; Hao Han; Jinyan Li 001; Limsoon Wong (Silico Biol., 2004)

Accomplishments and Challenges in Bioinformatics. - See-Kiong Ng; Limsoon Wong (IT Prof., 2004)

DeEPs: A New Instance-Based Lazy Discovery and Classification System. - Jinyan Li 001; Guozhu Dong; Kotagiri Ramamohanarao; Limsoon Wong (Mach. Learn., 2004)

Preface. - Yi-Ping Phoebe Chen; Limsoon Wong (APBC, 2005)

Mining Succinct Systems of Minimal Generators of Formal Concepts. - Guozhu Dong; Chunyu Jiang; Jian Pei 001; Jinyan Li 001; Limsoon Wong (DASFAA, 2005)

LinkageTracker: A Discriminative Pattern Tracking Approach to Linkage Disequilibrium Mapping. - Li Lin; Limsoon Wong; Tze-Yun Leong; Pohsan Lai (DASFAA, 2005)

A Correspondence Between Maximal Complete Bipartite Subgraphs and Closed Patterns. - Jinyan Li 001; Haiquan Li; Donny Soh; Limsoon Wong (PKDD, 2005)

Relative risk and odds ratio: a data mining perspective. - Haiquan Li; Jinyan Li 001; Limsoon Wong; Mengling Feng; Yap-Peng Tan (PODS, 2005)

DNAFSMiner: a web-based software toolbox to recognize two types of functional sites in DNA sequences. - Huiqing Liu; Hao Han; Jinyan Li 001; Limsoon Wong (Bioinform., 2005)

Use of extreme patient samples for outcome prediction from gene expression data. - Huiqing Liu; Jinyan Li 001; Limsoon Wong (Bioinform., 2005)

Guest Editors' Introduction: Data Mining in Bioinformatics. - Jinyan Li 001; Limsoon Wong; Qiang Yang 001 (IEEE Intell. Syst., 2005)

Structural geography of the space of emerging patterns. - Jinyan Li 001; Limsoon Wong (Intell. Data Anal., 2005)

Minimum Description Length Principle: Generators Are Preferable to Closed Patterns. - Jinyan Li 001; Haiquan Li; Limsoon Wong; Jian Pei 001; Guozhu Dong (AAAI, 2006)

Preface. - Tao Jiang; Ueng-Cheng Yang; Yi-Ping Phoebe Chen; Limsoon Wong (APBC, 2006)

Identification of MicroRNA Precursors via SVM. - Liang Huai Yang; Wynne Hsu; Mong-Li Lee; Limsoon Wong (APBC, 2006)

Pattern Recognition in Bioinformatics: An Introduction. - Jagath C. Rajapakse; Limsoon Wong; Raj Acharya (PRIB, 2006)

Positive Borders or Negative Borders: How to Make Lossless Generator Based Representations Concise. - Guimei Liu; Jinyan Li 001; Limsoon Wong; Wynne Hsu (SDM, 2006)

Adventures of a Logician-Engineer: A Journey through Logic, Engineering, Medicine, Biology, and Statistics. - Limsoon Wong (SYNASC, 2006)

Exploring Essential Attributes for Detecting MicroRNA Precursors from Background Sequences. - Yun Zheng; Wynne Hsu; Mong-Li Lee; Limsoon Wong (VDMB, 2006)

Dragon Promoter Mapper (DPM): a Bayesian framework for modelling promoter structures. - Rajesh Chowdhary; Sin Lam Tan; R. Ayesha Ali; Brent Boerlage; Limsoon Wong; Vladimir B. Bajic (Bioinform., 2006)

Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions. - Hon Nian Chua; Wing-Kin Sung; Limsoon Wong (Bioinform., 2006)

Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale. - Haiquan Li; Jinyan Li 001; Limsoon Wong (Bioinform., 2006)

Finding functional promoter motifs by computational methods: a word of caution. - Rajesh Chowdhary; Limsoon Wong; Vladimir B. Bajic (Int. J. Bioinform. Res. Appl., 2006)

AUTHOR: Text mining and management in biomedicine. - Jong-Chan Park; Gary Geunbae Lee; Limsoon Wong (ACM Trans. Asian Lang. Inf. Process., 2006)

Manifestation and Exploitation of Invariants in Bioinformatics. - Limsoon Wong (AB, 2007)

Distance Based Subspace Clustering with Flexible Dimension Partitioning. - Guimei Liu; Jinyan Li 001; Kelvin Sim; Limsoon Wong (ICDE, 2007)

CPS-tree: A Compact Partitioned Suffix Tree for Disk-based Indexing on Large Genome Sequences. - Swee-Seong Wong; Wing-Kin Sung; Limsoon Wong (ICDE, 2007)

Mining statistically important equivalence classes and delta-discriminative emerging patterns. - Jinyan Li 001; Guimei Liu; Limsoon Wong (KDD, 2007)

ECTracker - An Efficient Algorithm for Haplotype Analysis and Classification. - Li Lin; Limsoon Wong; Tze-Yun Leong; Pohsan Lai (MedInfo, 2007)

Evolution and Maintenance of Frequent Pattern Space When Transactions Are Removed. - Mengling Feng; Guozhu Dong; Jinyan Li 001; Yap-Peng Tan; Limsoon Wong (PAKDD, 2007)

An efficient strategy for extensive integration of diverse biological data for protein function prediction. - Hon Nian Chua; Wing-Kin Sung; Limsoon Wong (Bioinform., 2007)

Using indirect protein interactions for the prediction of Gene Ontology functions. - Hon Nian Chua; Wing-Kin Sung; Limsoon Wong (BMC Bioinform., 2007)

Enabling more sophisticated gene expression analysis for understanding diseases and optimizing treatments. - Donny Soh; Difeng Dong; Yike Guo; Limsoon Wong (SIGKDD Explor., 2007)

Maximal Biclique Subgraphs and Closed Pattern Pairs of the Adjacency Matrix: A One-to-One Correspondence and Mining Algorithms. - Jinyan Li 001; Guimei Liu; Haiquan Li; Limsoon Wong (IEEE Trans. Knowl. Data Eng., 2007)

Negative Generator Border for Effective Pattern Maintenance. - Mengling Feng; Jinyan Li 001; Limsoon Wong; Yap-Peng Tan (ADMA, 2008)

Effective Pruning Techniques for Mining Quasi-Cliques. - Guimei Liu; Limsoon Wong (ECML/PKDD (2), 2008)

Maximal Quasi-Bicliques with Balanced Noise Tolerance: Concepts and Co-clustering Applications. - Jinyan Li 001; Kelvin Sim; Guimei Liu; Limsoon Wong (SDM, 2008)

Guilt by association as a search principle. - Limsoon Wong (SIGIR, 2008)

Efficient mining of frequent XML query patterns with repeating-siblings. - Liang Huai Yang; Mong-Li Lee; Wynne Hsu; Decai Huang; Limsoon Wong (Inf. Softw. Technol., 2008)

Using Indirect protein-protein Interactions for protein Complex Prediction. - Hon Nian Chua; Kang Ning 001; Wing-Kin Sung; Hon Wai Leong; Limsoon Wong (J. Bioinform. Comput. Biol., 2008)

A new concise representation of frequent itemsets using generators and a positive border. - Guimei Liu; Jinyan Li 001; Limsoon Wong (Knowl. Inf. Syst., 2008)

Deciphering Drug Action and Escape Pathways: An Example on Nasopharyngeal Carcinoma. - Difeng Dong; Chun-Ying Cui; Benjamin Mow; Limsoon Wong (BICoB, 2009)

A Preliminary Study on the Effects of Fear Factors in Disease Propagation. - Yubo Wang; Jie Hu; Gaoxi Xiao; Limsoon Wong; Stefan Ma; Tee Hiang Cheng (Complex (2), 2009)

Key node selection for containing infectious disease spread using particle swarm optimization. - Xiuju Fu; Sonja Lim; Lipo Wang; Gary Lee 001; Stefan Ma; Limsoon Wong; Gaoxi Xiao (SIS, 2009)

Complex discovery from weighted PPI networks. - Guimei Liu; Limsoon Wong; Hon Nian Chua (Bioinform., 2009)

Non-redundant sequential rules - Theory and algorithm. - David Lo 001; Siau-Cheng Khoo; Limsoon Wong (Inf. Syst., 2009)

Sirius PSB: a Generic System for Analysis of Biological Sequences. - Chuan Hock Koh; Sharene Lin; Gregory Jedd; Limsoon Wong (J. Bioinform. Comput. Biol., 2009)

Protein Interactome Analysis for Countering Pathogen Drug Resistance. - Limsoon Wong; Guimei Liu (J. Comput. Sci. Technol., 2009)

Brief Overview of Bioinformatics Activities in Singapore. - Frank Eisenhaber; Chee Keong Kwoh 001; See-Kiong Ng; Wing-Kin Sung; Limsoon Wong (PLoS Comput. Biol., 2009)

Efficient mining of distance-based subspace clusters. - Guimei Liu; Kelvin Sim; Jinyan Li 001; Limsoon Wong (Stat. Anal. Data Min., 2009)

Overcoming drug resistance by co-targeting. - Marzieh Ayati; Golnaz Taheri; Shahriar Arab; Limsoon Wong; Changiz Eslahchi (BIBM, 2010)

Decomposing PPI networks for complex discovery. - Guimei Liu; Chern Han Yong; Limsoon Wong; Hon Nian Chua (BIBM, 2010)

CEO a cloud epistasis computing model in GWAS. - Zhengkui Wang; Yue Wang 006; Kian-Lee Tan; Limsoon Wong; Divyakant Agrawal (BIBM, 2010)

CAMBer: An approach to support comparative analysis of multiple bacterial strains. - Michal Wozniak 002; Limsoon Wong; Jerzy Tiuryn (BIBM, 2010)

Efficiently Finding the Best Parameter for the Emerging Pattern-Based Classifier PCL. - Thanh-Son Ngo; Mengling Feng; Guimei Liu; Limsoon Wong (PAKDD (1), 2010)

DA 1.0: parameter estimation of biological pathways using data assimilation approach. - Chuan Hock Koh; Masao Nagasaki; Ayumu Saito; Limsoon Wong; Satoru Miyano (Bioinform., 2010)

FastTagger: an efficient algorithm for genome-wide tag SNP selection using multi-marker linkage disequilibrium. - Guimei Liu; Yue Wang 006; Limsoon Wong (BMC Bioinform., 2010)

Consistency, comprehensiveness, and compatibility of pathway databases. - Donny Soh; Difeng Dong; Yike Guo; Limsoon Wong (BMC Bioinform., 2010)

Genome-wide analysis of regions similar to promoters of histone genes. - Rajesh Chowdhary; Vladimir B. Bajic; Difeng Dong; Limsoon Wong; Jun S. Liu (BMC Syst. Biol., 2010)

Protein complex prediction based on k-connected subgraphs in protein interaction network. - Mahnaz Habibi; Changiz Eslahchi; Limsoon Wong (BMC Syst. Biol., 2010)

Pattern Space Maintenance for Data Updates and Interactive Mining. - Mengling Feng; Guozhu Dong; Jinyan Li 001; Yap-Peng Tan; Limsoon Wong (Comput. Intell., 2010)

Wrestling with Biomedical Research Results: Language Resources and Literature Analysis. - Dietrich Rebholz-Schuhmann; Nigel Collier; Jong C. Park; Limsoon Wong (J. Bioinform. Comput. Biol., 2010)

Brief Introduction to Some New Results in Gene Expression Analysis, Systems Biology Modeling, Motif Identification, and (noncoding) RNA Analysis. - Limsoon Wong (J. Bioinform. Comput. Biol., 2010)

Towards exploratory hypothesis testing and analysis. - Guimei Liu; Mengling Feng; Yue Wang 006; Limsoon Wong; See-Kiong Ng; Tzia Liang Mah; Edmund Jon Deoon Lee (ICDE, 2011)

MIRACH: efficient model checker for quantitative biological pathway models. - Chuan Hock Koh; Masao Nagasaki; Ayumu Saito; Chen Li 007; Limsoon Wong; Satoru Miyano (Bioinform., 2011)

Structural analysis of the hot spots in the binding between H1N1 HA and the 2D1 antibody: do mutations of H1N1 from 1918 to 2009 affect much on this binding? - Qian Liu 014; Steven C. H. Hoi; Chinh T. T. Su; Zhenhua Li; Chee Keong Kwoh 001; Limsoon Wong; Jinyan Li 001 (Bioinform., 2011)

An empirical comparison of several recent epistatic interaction detection methods. - Yue Wang 006; Guimei Liu; Mengling Feng; Limsoon Wong (Bioinform., 2011)

eCEO: an efficient Cloud Epistasis cOmputing model in genome-wide association study. - Zhengkui Wang; Yue Wang 006; Kian-Lee Tan; Limsoon Wong; Divyakant Agrawal (Bioinform., 2011)

CAMBerVis: visualization software to support comparative analysis of multiple bacterial strains. - Michal Wozniak 002; Limsoon Wong; Jerzy Tiuryn (Bioinform., 2011)

Finding consistent disease subnetworks across microarray datasets. - Donny Soh; Difeng Dong; Yike Guo; Limsoon Wong (BMC Bioinform., 2011)

DBAC: A simple prediction method for protein binding hot spots based on burial levels and deeply buried atomic contacts. - Zhenhua Li; Limsoon Wong; Jinyan Li 001 (BMC Syst. Biol., 2011)

Using Biological Networks in Protein Function Prediction and Gene Expression Analysis. - Limsoon Wong (Internet Math., 2011)

Brief Introduction to Some New Papers on Lateral Transfer Reconstruction, Drug Candidate Screening, Disease Gene Identification, and Other Results. - Limsoon Wong (J. Bioinform. Comput. Biol., 2011)

Introduction - Some New Results and Tools for Protein Function Prediction, RNA Target Site Prediction, Genotype Calling, Environmental Genomics, and More. - Limsoon Wong (J. Bioinform. Comput. Biol., 2011)

Controlling False Positives in Association Rule Mining. - Guimei Liu; Haojun Zhang; Limsoon Wong (Proc. VLDB Endow., 2011)

Antibody-Specified B-Cell Epitope Prediction in Line with the Principle of Context-Awareness. - Liang Zhao; Limsoon Wong; Jinyan Li 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Mining Iterative Generators and Representative Rules for Software Specification Discovery. - David Lo 001; Jinyan Li 001; Limsoon Wong; Siau-Cheng Khoo (IEEE Trans. Knowl. Data Eng., 2011)

AssocExplorer: an association rule visualization system for exploratory data analysis. - Guimei Liu; Andre Suchitra; Haojun Zhang; Mengling Feng; See-Kiong Ng; Limsoon Wong (KDD, 2012)

Finding minimum representative pattern sets. - Guimei Liu; Haojun Zhang; Limsoon Wong (KDD, 2012)

The role of miRNAs in complex formation and control. - Wilson Wen Bin Goh; Hirotaka Oikawa; Judy Chia Ghee Sng; Marek J. Sergot; Limsoon Wong (Bioinform., 2012)

Response: an empirical comparison of several recent epistatic interaction detection methods. - Yue Wang 006; Guimei Liu; Mengling Feng; Limsoon Wong (Bioinform., 2012)

Improved statistical model checking methods for pathway analysis. - Chuan Hock Koh; Sucheendra K. Palaniappan; P. S. Thiagarajan; Limsoon Wong (BMC Bioinform., 2012)

Progressive dry-core-wet-rim hydration trend in a nested-ring topology of protein binding interfaces. - Zhenhua Li; Ying He 001; Limsoon Wong; Jinyan Li 001 (BMC Bioinform., 2012)

CMPF: Class-switching minimized pathfinding in metabolic networks. - Kevin Lim; Limsoon Wong (BMC Bioinform., 2012)

B-cell epitope prediction through a graph model. - Liang Zhao; Limsoon Wong; Lanyuan Lu; Steven C. H. Hoi; Jinyan Li 001 (BMC Bioinform., 2012)

Embracing noise to improve cross-batch prediction accuracy. - Chuan Hock Koh; Limsoon Wong (BMC Syst. Biol., 2012)

Supervised maximum-likelihood weighting of composite protein networks for complex prediction. - Chern Han Yong; Guimei Liu; Hon Nian Chua; Limsoon Wong (BMC Syst. Biol., 2012)

IntPath-an integrated pathway gene relationship database for model organisms and important pathogens. - Hufeng Zhou; Jingjing Jin; Haojun Zhang; Bo Yi; Michal Wozniak 002; Limsoon Wong (BMC Syst. Biol., 2012)

A network-based maximum link approach towards MS identifies potentially important roles for undetected ARRB1/2 and ACTB in liver cancer progression. - Wilson Wen Bin Goh; Yie Hou Lee; Zubaidah M. Ramdzan; Maxey C. M. Chung; Limsoon Wong; Marek J. Sergot (Int. J. Bioinform. Res. Appl., 2012)

Conservation of water molecules in protein binding interfaces. - Zhenhua Li; Ying He 001; Longbing Cao; Limsoon Wong; Jinyan Li 001 (Int. J. Bioinform. Res. Appl., 2012)

Predicting Protein Functions from Protein Interaction Networks. - Hon Nian Chua; Limsoon Wong (Int. J. Knowl. Discov. Bioinform., 2012)

A Short Introduction to Some Recent Progress in phylogenetic Network Reconstruction, genome Mapping, gene Expression Analysis, molecular Dynamic Simulation, and Other Problems in Bioinformatics. - Limsoon Wong (J. Bioinform. Comput. Biol., 2012)

Discovery of Protein Complexes with Core-Attachment Structures from Tandem Affinity Purification (TAP) Data. - Min Wu 008; Xiaoli Li 001; Chee Keong Kwoh 001; See-Kiong Ng; Limsoon Wong (J. Comput. Biol., 2012)

Detection of Outlier Residues for Improving Interface Prediction in Protein Heterocomplexes. - Peng Chen 001; Limsoon Wong; Jinyan Li 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Emerging Pattern Based Rules Characterizing Subtypes of Leukemia. - Jinyan Li 001; Limsoon Wong (Contrast Data Mining, 2013)

The Dichotomous Intensional Expressive Power of the Nested Relational Calculus with Powerset. - Limsoon Wong (In Search of Elegance in the Theory and Practice of Computation, 2013)

A dichotomy in the intensional expressive power of nested relational calculi augmented with aggregate functions and a powerset operator. - Limsoon Wong (PODS, 2013)

PLncDB: plant long non-coding RNA database. - Jingjing Jin; Jun Liu; Huan Wang; Limsoon Wong; Nam-Hai Chua (Bioinform., 2013)

Random forests on Hadoop for genome-wide association studies of multivariate neuroimaging phenotypes. - Yue Wang 006; Wilson Wen Bin Goh; Limsoon Wong; Giovanni Montana (BMC Bioinform., 2013)

Structural analysis on mutation residues and interfacial water molecules for human TIM disease understanding. - Zhenhua Li; Ying He 001; Qian Liu 014; Liang Zhao; Limsoon Wong; Chee Keong Kwoh 001; Hung T. Nguyen 001; Jinyan Li 001 (BMC Bioinform., 2013)

International Conference on Genome Informatics (GIW 2013) in Singapore: introduction to the systems biology contributions. - Frank Eisenhaber; Wing-Kin Sung; Limsoon Wong (BMC Syst. Biol., 2013)

Stringent DDI-based Prediction of H. sapiens-M. tuberculosis H37Rv Protein-Protein Interactions. - Hufeng Zhou; Javad Rezaei; Hugo Willy; Shangzhi Gao; Jingjing Jin; Mengyuan Fan; Chern Han Yong; Michal Wozniak 002; Limsoon Wong (BMC Syst. Biol., 2013)

The 24th International Conference on genome Informatics, Giw2013, in Singapore. - Frank Eisenhaber; Wing-Kin Sung; Limsoon Wong (J. Bioinform. Comput. Biol., 2013)

Disruption of protein complexes. - Golnaz Taheri; Mahnaz Habibi; Limsoon Wong; Changiz Eslahchi (J. Bioinform. Comput. Biol., 2013)

An Introduction to some New Results in Bioinformatics and Computational Biology. - Limsoon Wong (J. Bioinform. Comput. Biol., 2013)

Progress in Computational Studies of Host-pathogen Interactions. - Hufeng Zhou; Jingjing Jin; Limsoon Wong (J. Bioinform. Comput. Biol., 2013)

A Performance Study of Three Disk-based Structures for Indexing and Querying Frequent Itemsets. - Guimei Liu; Andre Suchitra; Limsoon Wong (Proc. VLDB Endow., 2013)

A semi-automated methodology for finding lipid-related GO terms. - Mengyuan Fan; Hong Sang Low; Markus R. Wenk; Limsoon Wong (Database J. Biol. Databases Curation, 2014)

LipidGO: database for lipid-related GO terms and applications. - Mengyuan Fan; Hong Sang Low; Hufeng Zhou; Markus R. Wenk; Limsoon Wong (Bioinform., 2014)

Finding consistent disease subnetworks using PFSNet. - Kevin Lim; Limsoon Wong (Bioinform., 2014)

Integrating water exclusion theory into βcontacts to predict binding free energy changes and binding hot spots. - Qian Liu 014; Steven C. H. Hoi; Chee Keong Kwoh 001; Limsoon Wong; Jinyan Li 001 (BMC Bioinform., 2014)

eCAMBer: efficient support for large-scale comparative analysis of multiple bacterial strains. - Michal Wozniak 002; Limsoon Wong; Jerzy Tiuryn (BMC Bioinform., 2014)

Discovery of small protein complexes from PPI networks with size-specific supervised weighting. - Chern Han Yong; Osamu Maruyama; Limsoon Wong (BMC Syst. Biol., 2014)

Using data fusion for scoring reliability of protein-protein interactions. - Alireza Vazifedoost; Maseud Rahgozar; Behzad Moshiri; Mehdi Sadeghi; Hon Nian Chua; See-Kiong Ng; Limsoon Wong (J. Bioinform. Comput. Biol., 2014)

JBCB, the first decade. - John C. Wooley; Ming Li 001; Limsoon Wong (J. Bioinform. Comput. Biol., 2014)

Guest Editorial for the International Conference on Genome Informatics (GIW 2013). - Frank Eisenhaber; Wing-Kin Sung; Limsoon Wong (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

Coupling Graphs, Efficient Algorithmsand B-Cell Epitope Prediction. - Liang Zhao; Steven C. H. Hoi; Zhenhua Li; Limsoon Wong; Hung T. Nguyen 001; Jinyan Li 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

A Flexible Approach to Finding Representative Pattern Sets. - Guimei Liu; Haojun Zhang; Limsoon Wong (IEEE Trans. Knowl. Data Eng., 2014)

Regularizing predicted complexes by mutually exclusive protein-protein interactions. - Osamu Maruyama; Limsoon Wong (ASONAM, 2015)

Hi-Jack: a novel computational framework for pathway-based inference of host-pathogen interactions. - Dimitrios Kleftogiannis; Limsoon Wong; John A. C. Archer; Panos Kalnis (Bioinform., 2015)

Two scenarios for overcoming drug resistance by co-targeting. - Golnaz Taheri; Marzieh Ayati; Limsoon Wong; Changiz Eslahchi (Int. J. Bioinform. Res. Appl., 2015)

John Wooley and JBCB. - Ming Li 001; Limsoon Wong (J. Bioinform. Comput. Biol., 2015)

A quantum leap in the reproducibility, precision, and sensitivity of gene expression profile analysis even when sample size is extremely small. - Kevin Lim; Zhenhua Li; Kwok Pui Choi; Limsoon Wong (J. Bioinform. Comput. Biol., 2015)

From the static interactome to dynamic protein complexes: Three challenges. - Chern Han Yong; Limsoon Wong (J. Bioinform. Comput. Biol., 2015)

Burial Level Change Defines a High Energetic Relevance for Protein Binding Interfaces. - Zhenhua Li; Ying He 001; Limsoon Wong; Jinyan Li 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Supporting Exploratory Hypothesis Testing and Analysis. - Guimei Liu; Haojun Zhang; Mengling Feng; Limsoon Wong; See-Kiong Ng (ACM Trans. Knowl. Discov. Data, 2015)

Redhyte: Towards a Self-diagnosing, Self-correcting, and Helpful Analytic Platform. - Wei Zhong Toh; Kwok Pui Choi; Limsoon Wong (ACIIDS (2), 2016)

Efficient Mining of Pan-Correlation Patterns from Time Course Data. - Qian Liu 014; Jinyan Li 001; Limsoon Wong; Kotagiri Ramamohanarao (ADMA, 2016)

GFS: fuzzy preprocessing for effective gene expression analysis. - Abha Belorkar; Limsoon Wong (BMC Bioinform., 2016)

Spectra-first feature analysis in clinical proteomics - A case study in renal cancer. - Wilson Wen Bin Goh; Limsoon Wong (J. Bioinform. Comput. Biol., 2016)

Evaluating feature-selection stability in next-generation proteomics. - Wilson Wen Bin Goh; Limsoon Wong (J. Bioinform. Comput. Biol., 2016)

High-speed and high-ratio referential genome compression. - Yuansheng Liu; Hui Peng; Limsoon Wong; Jinyan Li 001 (Bioinform., 2017)

MapReduce for accurate error correction of next-generation sequencing data. - Liang Zhao; Qingfeng Chen; Wencui Li; Peng Jiang; Limsoon Wong; Jinyan Li 001 (Bioinform., 2017)

Protein complex-based analysis is resistant to the obfuscating consequences of batch effects - a case study in clinical proteomics. - Wilson Wen Bin Goh; Limsoon Wong (BMC Genom., 2017)

OrthoGNC: A Software for Accurate Identification of Orthologs Based on Gene Neighborhood Conservation. - Soheil Jahangiri-Tazehkand; Limsoon Wong; Changiz Eslahchi (Genom. Proteom. Bioinform., 2017)

Editorial - Bioinformatics development at the BGRS SB conference series: 10th anniversary. - Yuriy L. Orlov; Nikolay A. Kolchanov; Ralf Hofestädt; Limsoon Wong (J. Bioinform. Comput. Biol., 2017)

Redhyte: a self-diagnosing, self-correcting, and helpful hypothesis analysis platform. - Wei Zhong Toh; Kwok Pui Choi; Limsoon Wong (J. Inf. Telecommun., 2017)

SPSNet: subpopulation-sensitive network-based analysis of heterogeneous gene expression data. - Abha Belorkar; Rajanikanth Vadigepalli; Limsoon Wong (BMC Syst. Biol., 2018)

Protein complex prediction by date hub removal. - Iana Pyrogova; Limsoon Wong (Comput. Biol. Chem., 2018)

Discovering pan-correlation patterns from time course data sets by efficient mining algorithms. - Qian Liu 014; Shameek Ghosh; Jinyan Li 001; Limsoon Wong; Kotagiri Ramamohanarao (Computing, 2018)

TICA: Transcriptional Interaction and Coregulation Analyzer. - Stefano Perna; Pietro Pinoli; Stefano Ceri; Limsoon Wong (Genom. Proteom. Bioinform., 2018)

Introduction to Selected Papers from GIW2018. - Jinyan Li 001; Kenta Nakai; Yun Zheng; Kengo Sato; Limsoon Wong (J. Bioinform. Comput. Biol., 2018)

Advanced bioinformatics methods for practical applications in proteomics. - Wilson Wen Bin Goh; Limsoon Wong (Briefings Bioinform., 2019)

kmcEx: memory-frugal and retrieval-efficient encoding of counted k-mers. - Peng Jiang; Jie Luo; Yiqi Wang 009; Pingji Deng; Bertil Schmidt; Xiangjun Tang; Ningjiang Chen; Limsoon Wong; Liang Zhao (Bioinform., 2019)

Allowing mutations in maximal matches boosts genome compression performance. - Yuansheng Liu; Limsoon Wong; Jinyan Li 001 (Bioinform., 2020)

The Birth of Bio-data Science: Trends, Expectations, and Applications. - Wilson Wen Bin Goh; Limsoon Wong (Genom. Proteom. Bioinform., 2020)

Extensions of the External Validation for Checking Learned Model Interpretability and Generalizability. - Sung Yang Ho; Kimberly Phua; Limsoon Wong; Wilson Wen Bin Goh (Patterns, 2020)

Avoid Oversimplifications in Machine Learning: Going beyond the Class-Prediction Accuracy. - Sung Yang Ho; Limsoon Wong; Wilson Wen Bin Goh (Patterns, 2020)

Genetic source completeness of HIV-1 circulating recombinant forms (CRFs) predicted by multi-label learning. - Runbin Tang; Zuguo Yu; Yuanlin Ma; Yaoqun Wu; Yi-Ping Phoebe Chen; Limsoon Wong; Jinyan Li 001 (Bioinform., 2021)

PDR: a new genome assembly evaluation metric based on genetics concerns. - Luyu Xie; Limsoon Wong (Bioinform., 2021)

Identifying collateral and synthetic lethal vulnerabilities within the DNA-damage response. - Pietro Pinoli; Sriganesh Srihari; Limsoon Wong; Stefano Ceri (BMC Bioinform., 2021)

What can Venn diagrams teach us about doing data science better? - Sung Yang Ho; Sophia Tan; Chun Chau Sze; Limsoon Wong; Wilson Wen Bin Goh (Int. J. Data Sci. Anal., 2021)

EnsembleFam: towards more accurate protein family prediction in the twilight zone. - Mohammad Neamul Kabir; Limsoon Wong (BMC Bioinform., 2022)

Iterating on multiple collections in synchrony. - Stefano Perna; Val Tannen; Limsoon Wong (J. Funct. Program., 2022)

Accounting for treatment during the development or validation of prediction models. - Wei Xin Chan; Limsoon Wong (J. Bioinform. Comput. Biol., 2022)

Evaluating network-based missing protein prediction using p-values, Bayes Factors, and probabilities. - Wilson Wen Bin Goh; Weijia Kong; Limsoon Wong (J. Bioinform. Comput. Biol., 2023)

ProInfer: An interpretable protein inference tool leveraging on biological networks. - Hui Peng; Limsoon Wong; Wilson Wen Bin Goh (PLoS Comput. Biol., 2023)

Obstacles to effective model deployment in healthcare. - Wei Xin Chan; Limsoon Wong (J. Bioinform. Comput. Biol., 2023)

ProJect: a powerful mixed-model missing value imputation method. - Weijia Kong; Bertrand Jern Han Wong; Harvard Wai Hann Hui; Kai Peng Lim; Yulan Wang; Limsoon Wong; Wilson Wen Bin Goh (Briefings Bioinform., 2023)

An Intensional Expressiveness Gap of Comprehension Syntax. - Limsoon Wong (Tannen's Festschrift, 2024)

Benchmarking recent computational tools for DNA-binding protein identification. - Xizi Luo; Amadeus Song Yi Chi; Andre Huikai Lin; Tze Jet Ong; Limsoon Wong; Chowdhury Rafeed Rahman (Briefings Bioinform., 2024)

Ten quick tips for ensuring machine learning model validity. - Wilson Wen Bin Goh; Mohammad Neamul Kabir; Sehwan Yoo; Limsoon Wong (PLoS Comput. Biol., 2024)

What can scatterplots teach us about doing data science better? - Wilson Wen Bin Goh; Reuben Jyong Kiat Foo; Limsoon Wong (Int. J. Data Sci. Anal., 2024)

How much can ChatGPT really help computational biologists in programming? - Chowdhury Rafeed Rahman; Limsoon Wong (J. Bioinform. Comput. Biol., 2024)