RIscoper: a tool for RNA-RNA interaction extraction from the literature. - Yang Zhang 125; Tianyuan Liu; Liqun Chen; Jinxurong Yang; Jiayi Yin; Yuncong Zhang; Zhixi Yun; Hao Xu; Lin Ning 002; Feng-Biao Guo; Yongshuai Jiang; Hao Lin 001; et al. (Bioinform., 2019)

cncRNAdb: a manually curated resource of experimentally supported RNAs with both protein-coding and noncoding function. - Yan Huang; Jing Wang 004; Yue Zhao; Huafeng Wang; Tianyuan Liu; Yuhe Li; Tianyu Cui; Weiyi Li; Yige Feng; Jiaxin Luo; Jiaqi Gong; Lin Ning 002; et al. (Nucleic Acids Res., 2021)

MNDR v3.0: mammal ncRNA-disease repository with increased coverage and annotation. - Lin Ning 002; Tianyu Cui; Boyang Zheng; Nuo Wang; Jiaxin Luo; Beilei Yang; Mengze Du; Jun Cheng; Yiying Dou; Dong Wang 011 (Nucleic Acids Res., 2021)

Cellinker: a platform of ligand-receptor interactions for intercellular communication analysis. - Yang Zhang 125; Tianyuan Liu; Jing Wang 004; Bohao Zou; Le Li; Linhui Yao; Kechen Chen; Lin Ning 002; Bingyi Wu; Xiaoyang Zhao; Dong Wang 011 (Bioinform., 2021)

PSnoD: identifying potential snoRNA-disease associations based on bounded nuclear norm regularization. - Zijie Sun; Qinlai Huang; Yuhe Yang; Shihao Li; Hao Lv; Yang Zhang 125; Hao Lin 001; Lin Ning 002 (Briefings Bioinform., 2022)

iLoc-miRNA: extracellular/intracellular miRNA prediction using deep BiLSTM with attention mechanism. - Zhao-Yue Zhang; Lin Ning 002; Xiucai Ye; Yu-He Yang; Yasunori Futamura; Tetsuya Sakurai; Hao Lin 001 (Briefings Bioinform., 2022)

AGODB: a comprehensive domain annotation database of argonaute proteins. - Bowen Li; Shanshan Yang; Jinjin Long; Xue Chen; Qianyue Zhang; Lin Ning 002; Bifang He; Heng Chen; Jian Huang 004 (Database J. Biol. Databases Curation, 2022)

Analysis and modeling of myopia-related factors based on questionnaire survey. - Jianqiang Xiao; Mujiexin Liu; Qinlai Huang; Zijie Sun; Lin Ning 002; Junguo Duan; Siquan Zhu; Jian Huang 004; Hao Lin 001; Hui Yang (Comput. Biol. Medicine, 2022)

ViRBase v3.0: a virus and host ncRNA-associated interaction repository with increased coverage and annotation. - Jun Cheng; Yunqing Lin; Linfu Xu; Kechen Chen; Qi Li; Kaixin Xu; Lin Ning 002; Juanjuan Kang; Tianyu Cui; Yan Huang; Xiaoyang Zhao; Dong Wang 011; et al. (Nucleic Acids Res., 2022)

RNAPhaSep: a resource of RNAs undergoing phase separation. - Haibo Zhu; Hao Fu; Tianyu Cui; Lin Ning 002; Huaguo Shao; Yehan Guo; Yanting Ke; Jiayi Zheng; Hongyan Lin; Xin Wu; Guanghao Liu; Jun He; et al. (Nucleic Acids Res., 2022)

MetaboliteCOVID: A manually curated database of metabolite markers for COVID-19. - Liping Ren; Lin Ning 002; Yu Yang; Ting Yang; Xinyu Li; Shanshan Tan; Peixin Ge; Shun Li; Nanchao Luo; Pei Tao; Yang Zhang 125 (Comput. Biol. Medicine, 2023)

Attention is all you need: utilizing attention in AI-enabled drug discovery. - Yang Zhang 125; Caiqi Liu; Mujiexin Liu; Tianyuan Liu; Hao Lin 001; Cheng-Bing Huang; Lin Ning 002 (Briefings Bioinform., 2024)

ncRS: A resource of non-coding RNAs in sepsis. - Baocai Zhong; Yongfang Dai; Li Chen; Xinying Xu; Yuxi Lan; Leyao Deng; Liping Ren; Nanchao Luo; Lin Ning 002 (Comput. Biol. Medicine, 2024)

E-MuLA: An Ensemble Multi-Localized Attention Feature Extraction Network for Viral Protein Subcellular Localization. - Bakanina Kissanga Grace-Mercure; Hasan Zulfiqar; Shenghan Gao; Sophyani Banaamwini Yussif; Biffon Manyura Momanyi; Lin Ning 002; Hao Lin 001; Cheng-Bing Huang (Inf., 2024)