Anatomical Annotations for Drosophila Gene Expression Patterns via Multi-Dimensional Visual Descriptors Integration: Multi-Dimensional Feature Learning. - Hongchang Gao; Lin Yan 003; Weidong Cai 001; Heng Huang (KDD, 2015)

Identifying Connectome Module Patterns via New Balanced Multi-graph Normalized Cut. - Hongchang Gao; Chengtao Cai; Jingwen Yan; Lin Yan 003; Joaquín Goñi Cortes; Yang Wang; Feiping Nie 001; John D. West; Andrew J. Saykin; Li Shen 001; Heng Huang (MICCAI (2), 2015)

From Protein Sequence to Protein Function via Multi-Label Linear Discriminant Analysis. - Hua Wang 007; Lin Yan 003; Heng Huang; Chris H. Q. Ding (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

Homology-Preserving Dimensionality Reduction via Manifold Landmarking and Tearing. - Lin Yan 003; Yaodong Zhao; Paul Rosen 001; Carlos Scheidegger; Bei Wang 001 (CoRR, 2018)

State of the Art in Time-Dependent Flow Topology: Interpreting Physical Meaningfulness Through Mathematical Properties. - Roxana Bujack; Lin Yan 003; Ingrid Hotz; Christoph Garth; Bei Wang 001 (Comput. Graph. Forum, 2020)

A Structural Average of Labeled Merge Trees for Uncertainty Visualization. - Lin Yan 003; Yusu Wang 001; Elizabeth Munch; Ellen Gasparovic; Bei Wang 001 (IEEE Trans. Vis. Comput. Graph., 2020)

Scalar Field Comparison with Topological Descriptors: Properties and Applications for Scientific Visualization. - Lin Yan 003; Talha Bin Masood; Raghavendra Sridharamurthy; Farhan Rasheed; Vijay Natarajan; Ingrid Hotz; Bei Wang 001 (Comput. Graph. Forum, 2021)

A Novel Sensor System for In Vivo Perception Reconstruction Based on Long Short-Term Memory Networks. - Ding Han; Guozheng Yan; Lichao Wang; Fangfang Hua; Lin Yan 003 (Sensors, 2022)

Uncertainty Visualization of 2D Morse Complex Ensembles Using Statistical Summary Maps. - Tushar M. Athawale; Dan Maljovec; Lin Yan 003; Chris R. Johnson 001; Valerio Pascucci; Bei Wang 001 (IEEE Trans. Vis. Comput. Graph., 2022)

Merge Trees and Their Variants for Scientific Visualization. - Lin Yan 003 (2022)

Flexible and Probabilistic Topology Tracking with Partial Optimal Transport. - Mingzhe Li; Xinyuan Yan; Lin Yan 003; Tom Needham; Bei Wang 001 (CoRR, 2023)

Geometry-Aware Merge Tree Comparisons for Time-Varying Data With Interleaving Distances. - Lin Yan 003; Talha Bin Masood; Farhan Rasheed; Ingrid Hotz; Bei Wang 001 (IEEE Trans. Vis. Comput. Graph., 2023)

Multilevel Robustness for 2D Vector Field Feature Tracking, Selection and Comparison. - Lin Yan 003; Paul Aaron Ullrich; Luke P. Van Roekel; Bei Wang 001; Hanqi Guo 001 (Comput. Graph. Forum, 2023)

Topological Characterization and Uncertainty Visualization of Atmospheric Rivers. - Fangfei Lan; Brandi Gamelin; Lin Yan 003; Jiali Wang; Bei Wang 001; Hanqi Guo 001 (Comput. Graph. Forum, 2024)

TROPHY: A Topologically Robust Physics-Informed Tracking Framework for Tropical Cyclones. - Lin Yan 003; Hanqi Guo 001; Thomas Peterka; Bei Wang 001; Jiali Wang (IEEE Trans. Vis. Comput. Graph., 2024)

TopoSZ: Preserving Topology in Error-Bounded Lossy Compression. - Lin Yan 003; Xin Liang 001; Hanqi Guo 001; Bei Wang 001 (IEEE Trans. Vis. Comput. Graph., 2024)

Topology-Based Visualization Techniques for Scientific Data Exploration. - Lin Yan 003 (IEEE Computer Graphics and Applications, 2025)

MSz: An Efficient Parallel Algorithm for Correcting Morse-Smale Segmentations in Error-Bounded Lossy Compressors. - Yuxiao Li 002; Xin Liang 001; Bei Wang 001; Yongfeng Qiu; Lin Yan 003; Hanqi Guo 001 (IEEE Trans. Vis. Comput. Graph., 2025)

A General Framework for Augmenting Lossy Compressors With Topological Guarantees. - Nathaniel Gorski; Xin Liang 001; Hanqi Guo 001; Lin Yan 003; Bei Wang 001 (IEEE Trans. Vis. Comput. Graph., 2025)