A Circular Matrix-Merging Algorithm with Application in VMAT Radiation Therapy. - Danny Z. Chen; David Craft; Lin Yang 003 (FAW, 2014)

A seeding-searching-ensemble method for gland segmentation and detection. - Yizhe Zhang 001; Lin Yang 003; John D. MacKenzie; Rageshree Ramachandran; Danny Z. Chen (BIBM, 2015)

Fast Background Removal in 3D Fluorescence Microscopy Images Using One-Class Learning. - Lin Yang 003; Yizhe Zhang 001; Ian H. Guldner; Siyuan Zhang; Danny Z. Chen (MICCAI (3), 2015)

Segmentation of vascular structures and hematopoietic cells in 3D microscopy images and quantitative analysis. - Jian Mu; Lin Yang 003; Malgorzata M. Kamocka; Amy L. Zollman; Nadia Carlesso; Danny Z. Chen (Image Processing, 2015)

A circular matrix-merging algorithm with application in Volumetric Intensity-Modulated Arc Therapy. - Danny Z. Chen; David Craft; Lin Yang 003 (Theor. Comput. Sci., 2015)

Coarse-to-Fine Stacked Fully Convolutional Nets for lymph node segmentation in ultrasound images. - Yizhe Zhang 001; Michael T. C. Ying; Lin Yang 003; Anil T. Ahuja; Danny Z. Chen (BIBM, 2016)

Segmentation and tracking of Pseudomonas aeruginosa for cell dynamics analysis in time-lapse images. - Jianxu Chen 001; Yiqing Cai; Chen Wei; Lin Yang 003; Mark S. Alber; Danny Ziyi Chen (ISBI, 2016)

3D Segmentation of Glial Cells Using Fully Convolutional Networks and k-Terminal Cut. - Lin Yang 003; Yizhe Zhang 001; Ian H. Guldner; Siyuan Zhang; Danny Z. Chen (MICCAI (2), 2016)

Combining Fully Convolutional and Recurrent Neural Networks for 3D Biomedical Image Segmentation. - Jianxu Chen 001; Lin Yang 003; Yizhe Zhang 001; Mark S. Alber; Danny Ziyi Chen (NIPS, 2016)

A seeding-searching-ensemble method for gland segmentation in H&E-stained images. - Yizhe Zhang 001; Lin Yang 003; John D. MacKenzie; Rageshree Ramachandran; Danny Z. Chen (BMC Medical Informatics Decis. Mak., 2016)

Fast Background Removal Method for 3D Multi-channel Deep Tissue Fluorescence Imaging. - Chenchen Li; Xiaowei Li; Hongji Cao; He Jiang; Xiaotie Deng; Danny Z. Chen; Lin Yang 003; Zhifeng Shao (MICCAI (2), 2017)

Suggestive Annotation: A Deep Active Learning Framework for Biomedical Image Segmentation. - Lin Yang 003; Yizhe Zhang 001; Jianxu Chen 001; Siyuan Zhang; Danny Z. Chen (MICCAI (3), 2017)

Deep Adversarial Networks for Biomedical Image Segmentation Utilizing Unannotated Images. - Yizhe Zhang 001; Lin Yang 003; Jianxu Chen 001; Maridel Fredericksen; David P. Hughes; Danny Z. Chen (MICCAI (3), 2017)

Forward backward similarity search in knowledge networks. - Baoxu Shi; Lin Yang 003; Tim Weninger (Knowl. Based Syst., 2017)

Biomedical Image Segmentation Using Fully Convolutional Networks on TrueNorth. - Indranil Palit; Lin Yang 003; Yue Ma 001; Danny Z. Chen; Michael T. Niemier; Jinjun Xiong; Xiaobo Sharon Hu (CBMS, 2018)

Quantization of Fully Convolutional Networks for Accurate Biomedical Image Segmentation. - Xiaowei Xu 004; Qing Lu 001; Lin Yang 003; Xiaobo Sharon Hu; Danny Z. Chen; Yu Hu 002; Yiyu Shi 001 (CVPR, 2018)

A new registration approach for dynamic analysis of calcium signals in organs. - Peixian Liang; Jianxu Chen 001; Pavel A. Brodskiy; Qinfeng Wu; Yejia Zhang; Yizhe Zhang 001; Lin Yang 003; Jeremiah J. Zartman; Danny Z. Chen (ISBI, 2018)

Deep Learning Based Instance Segmentation in 3D Biomedical Images Using Weak Annotation. - Zhuo Zhao; Lin Yang 003; Hao Zheng 006; Ian H. Guldner; Siyuan Zhang; Danny Z. Chen (MICCAI (4), 2018)

BoxNet: Deep Learning Based Biomedical Image Segmentation Using Boxes Only Annotation. - Lin Yang 003; Yizhe Zhang 001; Zhuo Zhao; Hao Zheng 006; Peixian Liang; Michael T. C. Ying; Anil T. Ahuja; Danny Z. Chen (CoRR, 2018)

Biomedical Image Segmentation via Representative Annotation. - Hao Zheng 006; Lin Yang 003; Jianxu Chen 001; Jun Han 010; Yizhe Zhang 001; Peixian Liang; Zhuo Zhao; Chaoli Wang 001; Danny Z. Chen (AAAI, 2019)

A New Ensemble Learning Framework for 3D Biomedical Image Segmentation. - Hao Zheng 006; Yizhe Zhang 001; Lin Yang 003; Peixian Liang; Zhuo Zhao; Chaoli Wang 001; Danny Z. Chen (AAAI, 2019)

Cascade Decoder: A Universal Decoding Method For Biomedical Image Segmentation. - Peixian Liang; Jianxu Chen 001; Hao Zheng 006; Lin Yang 003; Yizhe Zhang 001; Danny Z. Chen (ISBI, 2019)

HFA-Net: 3D Cardiovascular Image Segmentation with Asymmetrical Pooling and Content-Aware Fusion. - Hao Zheng 006; Lin Yang 003; Jun Han 010; Yizhe Zhang 001; Peixian Liang; Zhuo Zhao; Chaoli Wang 001; Danny Z. Chen (MICCAI (2), 2019)

SPDA: Superpixel-based Data Augmentation for Biomedical Image Segmentation. - Yizhe Zhang 001; Lin Yang 003; Hao Zheng 006; Peixian Liang; Colleen Mangold; Raquel G. Loreto; David P. Hughes; Danny Z. Chen (MIDL, 2019)

An Annotation Sparsification Strategy for 3D Medical Image Segmentation via Representative Selection and Self-Training. - Hao Zheng 006; Yizhe Zhang 001; Lin Yang 003; Chaoli Wang 001; Danny Z. Chen (AAAI, 2020)

Unlabeled Data Guided Semi-supervised Histopathology Image Segmentation. - Hongxiao Wang; Hao Zheng 006; Jianxu Chen 001; Lin Yang 003; Yizhe Zhang 001; Danny Z. Chen (BIBM, 2020)

Hierarchical Self-supervised Learning for Medical Image Segmentation Based on Multi-domain Data Aggregation. - Hao Zheng 006; Jun Han 010; Hongxiao Wang; Lin Yang 003; Zhuo Zhao; Chaoli Wang 001; Danny Z. Chen (MICCAI (1), 2021)