ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates. - Oliver Schwengers; Andreas Hoek; Moritz Fritzenwanker; Linda Falgenhauer; Torsten Hain; Trinad Chakraborty; Alexander Goesmann (PLoS Comput. Biol., 2020)

Prediction of antimicrobial resistance based on whole-genome sequencing and machine learning. - Yunxiao Ren; Trinad Chakraborty; Swapnil Doijad; Linda Falgenhauer; Jane Falgenhauer; Alexander Goesmann; Anne-Christin Hauschild; Oliver Schwengers; Dominik Heider (Bioinform., 2022)