SubTab: Subsetting Features of Tabular Data for Self-Supervised Representation Learning. - Talip Ucar; Ehsan Hajiramezanali; Lindsay Edwards (NeurIPS, 2021)

PyRelationAL: A Library for Active Learning Research and Development. - Paul Scherer; Thomas Gaudelet; Alison Pouplin; Suraj M. S; Jyothish Soman; Lindsay Edwards; Jake P. Taylor-King (CoRR, 2022)

Season combinatorial intervention predictions with Salt & Peper. - Thomas Gaudelet; Alice Del Vecchio; Eli M. Carrami; Juliana Cudini; Chantriolnt-Andreas Kapourani; Caroline Uhler; Lindsay Edwards (CoRR, 2024)

BioNeMo Framework: a modular, high-performance library for AI model development in drug discovery. - Peter St. John; Dejun Lin; Polina Binder; Malcolm Greaves; Vega Shah; John St. John; Adrian Lange; Patrick D. Hsu; Rajesh Illango; Arvind Ramanathan; Anima Anandkumar; David H. Brookes; et al. (CoRR, 2024)

No Foundations without Foundations - Why semi-mechanistic models are essential for regulatory biology. - Luka Kovacevic; Thomas Gaudelet; James Opzoomer; Hagen Triendl; John Whittaker; Caroline Uhler; Lindsay Edwards; Jake P. Taylor-King (CoRR, 2025)