Computational design of ligand-binding proteins with high affinity and selectivity. - Christine E. Tinberg; Sagar D. Khare; Jiayi Dou; Lindsey Doyle; Jorgen W. Nelson; Alberto Schena; Wojciech Jankowski; Charalampos G. Kalodimos; Kai Johnsson; Barry L. Stoddard; David Baker 001 (Nat., 2013)

Rational design of α-helical tandem repeat proteins with closed architectures. - Lindsey Doyle; Jazmine Hallinan; Jill Bolduc; Fabio Parmeggiani; David Baker 001; Barry L. Stoddard; Philip Bradley (Nat., 2015)

CSAR Benchmark Exercise 2013: Evaluation of Results from a Combined Computational Protein Design, Docking, and Scoring/Ranking Challenge. - Richard D. Smith; Kelly L. Damm-Ganamet; James B. Dunbar Jr.; Aqeel Ahmed; Krishnapriya Chinnaswamy; James Delproposto; Ginger Kubish; Christine E. Tinberg; Sagar D. Khare; Jiayi Dou; Lindsey Doyle; Jeanne A. Stuckey; et al. (J. Chem. Inf. Model., 2016)

De novo design of a fluorescence-activating β-barrel. - Jiayi Dou; Anastassia A. Vorobieva; William Sheffler; Lindsey Doyle; Hahnbeom Park; Matthew J. Bick; Binchen Mao; Glenna W. Foight; Min-Yen Lee; Lauren A. Gagnon; Lauren P. Carter; Banumathi Sankaran; et al. (Nat., 2018)