HybridSim-VS: a web server for large-scale ligand-based virtual screening using hybrid similarity recognition techniques. - Jinling Shang; Xi Dai; Yecheng Li; Marco Pistolozzi; Ling Wang 008 (Bioinform., 2017)

RADER: a RApid DEcoy Retriever to facilitate decoy based assessment of virtual screening. - Ling Wang 008; Xiaoqian Pang; Yecheng Li; Ziying Zhang; WenAn Tan (Bioinform., 2017)

HybridMolDB: A Manually Curated Database Dedicated to Hybrid Molecules for Chemical Biology and Drug Discovery. - Yecheng Li; Chongze Zhao; Jianhua Zhang; Shiyang Zhai; Boyan Wei; Ling Wang 008 (J. Chem. Inf. Model., 2019)

EK-DRD: A Comprehensive Database for Drug Repositioning Inspired by Experimental Knowledge. - Chongze Zhao; Xi Dai; Yecheng Li; Qingqing Guo; Jianhua Zhang; Xiaotong Zhang; Ling Wang 008 (J. Chem. Inf. Model., 2019)

A comprehensive comparative assessment of 3D molecular similarity tools in ligand-based virtual screening. - Zhenla Jiang; Jianrong Xu; Aixia Yan; Ling Wang 008 (Briefings Bioinform., 2021)

FP-GNN: a versatile deep learning architecture for enhanced molecular property prediction. - Hanxuan Cai; Huimin Zhang; Duancheng Zhao; Jingxing Wu; Ling Wang 008 (Briefings Bioinform., 2022)

HiGNN: Hierarchical Informative Graph Neural Networks for Molecular Property Prediction Equipped with Feature-Wise Attention. - Weimin Zhu; Yi Zhang; Duancheng Zhao; Jianrong Xu; Ling Wang 008 (CoRR, 2022)

VDDB: a comprehensive resource and machine learning platform for antiviral drug discovery. - Shunming Tao; Yihao Chen; Jingxing Wu; Duancheng Zhao; Hanxuan Cai; Ling Wang 008 (CoRR, 2022)

HiGNN: A Hierarchical Informative Graph Neural Network for Molecular Property Prediction Equipped with Feature-Wise Attention. - Weimin Zhu; Yi Zhang; Duancheng Zhao; Jianrong Xu; Ling Wang 008 (J. Chem. Inf. Model., 2023)

FG-BERT: a generalized and self-supervised functional group-based molecular representation learning framework for properties prediction. - Biaoshun Li; Mujie Lin; Tiegen Chen; Ling Wang 008 (Briefings Bioinform., 2023)

MMSyn: A New Multimodal Deep Learning Framework for Enhanced Prediction of Synergistic Drug Combinations. - Yu Pang; Yihao Chen; Mujie Lin; Yanhong Zhang; Jiquan Zhang; Ling Wang 008 (J. Chem. Inf. Model., 2024)

Highly Accurate and Explainable Predictions of Small-Molecule Antioxidants for Eight In Vitro Assays Simultaneously through an Alternating Multitask Learning Strategy. - Duancheng Zhao; Yanhong Zhang; Yihao Chen; Biaoshun Li; Wenguang Zhou; Ling Wang 008 (J. Chem. Inf. Model., 2024)

NA-DB: An Online Database of Nucleoside Analogues. - Haolin Luo; Ting Ran; Ling Wang 008; Hongming Chen 001 (J. Chem. Inf. Model., 2025)