Simulating the Growth of Viruses. - Lingchong You; John Yin (Pacific Symposium on Biocomputing, 2001)

Modeling biological systems using Dynetica-a simulator of dynamic networks. - Lingchong You; Apirak Hoonlor; John Yin (Bioinform., 2003)

Engineering synthetic killer circuits in bacteria. - Lingchong You (DAC, 2007)

Sensing and Integration of Erk and PI3K Signals by Myc. - Tae J. Lee; Guang Yao; Joseph Nevins; Lingchong You (PLoS Comput. Biol., 2008)

Noise Reduction by Diffusional Dissipation in a Minimal Quorum Sensing Motif. - Yu Tanouchi; Dennis Tu; Jungsang Kim; Lingchong You (PLoS Comput. Biol., 2008)

Synthetic biology: Division of logic labour. - Bochong Li; Lingchong You (Nat., 2011)

Computation of Steady-State Probability Distributions in Stochastic Models of Cellular Networks. - Mark Hallen; Bochong Li; Yu Tanouchi; Cheemeng Tan; Mike West; Lingchong You (PLoS Comput. Biol., 2011)

Tension and Robustness in Multitasking Cellular Networks. - Jeffrey V. Wong; Bochong Li; Lingchong You (PLoS Comput. Biol., 2012)

Predictive power of cell-to-cell variability. - Bochong Li; Lingchong You (Quant. Biol., 2013)

Phenotypic Signatures Arising from Unbalanced Bacterial Growth. - Cheemeng Tan; Robert Phillip Smith; Ming-Chi Tsai; Russell Schwartz; Lingchong You (PLoS Comput. Biol., 2014)

Construction, visualization, and analysis of biological network models in Dynetica. - Derek Eidum; Kanishk Asthana; Samir Unni; Michael Deng; Lingchong You (Quant. Biol., 2014)

A Power-Law Dependence of Bacterial Invasion on Mammalian Host Receptors. - Tae J. Lee; Jeffrey V. Wong; Sena Bae; Anna Jisu Lee; Allison J. Lopatkin; Fan Yuan; Lingchong You (PLoS Comput. Biol., 2015)

Bacterial Temporal Dynamics Enable Optimal Design of Antibiotic Treatment. - Hannah R. Meredith; Allison J. Lopatkin; Deverick J. Anderson; Lingchong You (PLoS Comput. Biol., 2015)

Processing Oscillatory Signals by Incoherent Feedforward Loops. - Carolyn Zhang; Ryan Tsoi; Feilun Wu; Lingchong You (PLoS Comput. Biol., 2016)

Prophage Hunter: an integrative hunting tool for active prophages. - Wenchen Song; Hai-Xi Sun; Carolyn Zhang; Li Cheng; Ye Peng; Ziqing Deng; Dan Wang; Yun Wang; Ming Hu; Wenen Liu; Huanming Yang; Yue Shen; et al. (Nucleic Acids Res., 2019)

Quantifying E2F1 protein dynamics in single cells. - Bernard Mathey-Prevot; Bao-Tran Parker; Carolyn Im; Cierra Hong; Peng Dong; Guang Yao; Lingchong You (Quant. Biol., 2020)

Repulsive expansion dynamics in colony growth and gene expression. - Yangxiaolu Cao; John Neu; Andrew E. Blanchard; Ting Lu; Lingchong You (PLoS Comput. Biol., 2021)

Distributed information encoding and decoding using self-organized spatial patterns. - Jia Lu; Ryan Tsoi; Nan Luo; Yuanchi Ha; Shangying Wang; Minjun Kwak; Yasa Baig; Nicole Moiseyev; Shari Tian; Alison Zhang; Neil Zhenqiang Gong; Lingchong You (Patterns, 2022)

Data-driven learning of structure augments quantitative prediction of biological responses. - Yuanchi Ha; Helena R. Ma; Feilun Wu; Andrea Weiss; Katherine Duncker; Helen Z. Xu; Jia Lu; Max Golovsky; Daniel Reker; Lingchong You (PLoS Comput. Biol., 2024)