TMNP: a transcriptome-based multi-scale network pharmacology platform for herbal medicine. - Peng Li 004; Haoran Zhang; Wuxia Zhang; Yuanyuan Zhang; Lingmin Zhan; Ning Wang 048; Caiping Chen; Bangze Fu; Jinzhong Zhao; Xuezhong Zhou; Shuzhen Guo; Jianxin Chen (Briefings Bioinform., 2022)

A genome-scale deep learning model to predict gene expression changes of genetic perturbations from multiplex biological networks. - Lingmin Zhan; Yingdong Wang; Aoyi Wang; Yuanyuan Zhang; Caiping Cheng; Jinzhong Zhao; Wuxia Zhang; Jianxin Chen; Peng Li 004 (Briefings Bioinform., 2024)

Drug-target interaction prediction by integrating heterogeneous information with mutual attention network. - Yuanyuan Zhang; Yingdong Wang; Chaoyong Wu; Lingmin Zhan; Aoyi Wang; Caiping Cheng; Jinzhong Zhao; Wuxia Zhang; Jianxin Chen; Peng Li 004 (BMC Bioinform., 2024)