Combined prediction of transmembrane topology and signal peptide of β-barrel proteins: Using a hidden Markov model and genetic algorithms. - Lingyun Zou; Zhengzhi Wang; Yongxian Wang; Fuquan Hu (Comput. Biol. Medicine, 2010)

Accurate prediction of bacterial type IV secreted effectors using amino acid composition and PSSM profiles. - Lingyun Zou; Chonghan Nan; Fuquan Hu (Bioinform., 2013)

EBGW_OMP: A sequence-based method for accurate prediction of outer membrane proteins. - Lingyun Zou; Qingshan Ni; Fuquan Hu (CIBCB, 2014)

Accurate Discrimination of outer membrane proteins using secondary Structure Element Alignment and Support Vector Machine. - Qingshan Ni; Lingyun Zou (J. Bioinform. Comput. Biol., 2014)

Computational prediction of bacterial type IV-B effectors using C-terminal signals and machine learning algorithms. - Lingyun Zou; Kang Chen (CIBCB, 2016)

An account of in silico identification tools of secreted effector proteins in bacteria and future challenges. - Cong Zeng; Lingyun Zou (Briefings Bioinform., 2019)

Experimental Comparison of Graph Edit Distance Computation Methods. - Gaoming Zhang; Sen Lin; Xianmin Wang; Teng Huang 001; Xuan Hu; Lingyun Zou (MDM, 2023)