Clust&See: A Cytoscape plugin for the identification, visualization and manipulation of network clusters. - Lionel Spinelli; Philippe Gambette; Charles E. Chapple; Benoît Robisson; Anaïs Baudot; Henri Garreta; Laurent Tichit; Alain Guénoche; Christine Brun (Biosyst., 2013)

Pasha: a versatile R package for piling chromatin HTS data. - Romain Fenouil; Nicolas Descostes; Lionel Spinelli; Frederic Koch; Muhammad Ahmad Maqbool; Touati Benoukraf; Pierre Cauchy; Charlène Innocenti; Pierre Ferrier; Jean-Christophe Andrau (Bioinform., 2016)

MoonDB 2.0: an updated database of extreme multifunctional and moonlighting proteins. - Diogo M. Ribeiro; Galadriel Brière; Benoit Bely; Lionel Spinelli; Christine Brun (Nucleic Acids Res., 2019)

MetamORF: a repository of unique short open reading frames identified by both experimental and computational approaches for gene and metagene analyses. - Sebastien A. Choteau; Audrey Wagner; Philippe Pierre; Lionel Spinelli; Christine Brun (Database J. Biol. Databases Curation, 2021)

ChagasDB: 80 years of publicly available data on the molecular host response to Trypanosoma cruzi infection in a single database. - Pauline Brochet; Jean-Christophe Mouren; Laurent Hannouche; Fabrice Lopez; Benoît Ballester; Edecio Cunha-Neto; Lionel Spinelli; Christophe Chevillard (Database J. Biol. Databases Curation, 2023)