A Generalized Multivariate Approach for Correlation-Based Pattern Discovery from Replicated Molecular Profiling Data. - Dongxiao Zhu; Guorong Xu; Lipi R. Acharya (BIBM, 2009)

Estimating an Optimal Correlation Structure from Replicated Molecular Profiling Data Using Finite Mixture Models. - Lipi R. Acharya; Dongxiao Zhu (ICMLA, 2009)

A Generalized Multivariate Approach to Pattern Discovery from Replicated and Incomplete Genome-Wide Measurements. - Dongxiao Zhu; Lipi R. Acharya; Hui Zhang (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Optimal structural inference of signaling pathways from unordered and overlapping gene sets. - Lipi R. Acharya; Thair Judeh; Guangdi Wang; Dongxiao Zhu (Bioinform., 2012)

GSGS: A Computational Approach to Reconstruct Signaling Pathway Structures from Gene Sets. - Lipi R. Acharya; Thair Judeh; Zhansheng Duan; Michael G. Rabbat; Dongxiao Zhu (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Gene Set Cultural Algorithm: A Cultural Algorithm Approach to Reconstruct Networks from Gene Sets. - Thair Judeh; Thaer Jayyousi; Lipi R. Acharya; Robert G. Reynolds; Dongxiao Zhu (BCB, 2013)

GSCA: Reconstructing biological pathway topologies using a cultural algorithms approach. - Thair Judeh; Thaer Jayyousi; Lipi R. Acharya; Robert G. Reynolds; Dongxiao Zhu (IEEE Congress on Evolutionary Computation, 2014)

Network inference through synergistic subnetwork evolution. - Lipi R. Acharya; Robert G. Reynolds; Dongxiao Zhu (EURASIP J. Bioinform. Syst. Biol., 2015)

Gene-set-based inference of biological network topologies from big molecular profiling data. - Lipi R. Acharya; Dongxiao Zhu (Big Data over Networks, 2016)

Transcriptome assembly strategies for precision medicine. - Lu Wang 004; Lipi R. Acharya; Changxin Bai; Dongxiao Zhu (Quant. Biol., 2017)