deepregression: a Flexible Neural Network Framework for Semi-Structured Deep Distributional Regression. - David Rügamer; Ruolin Shen; Christina Bukas; Lisa Barros de Andrade e Sousa; Dominik Thalmeier; Nadja Klein; Chris Kolb; Florian Pfisterer; Philipp Kopper; Bernd Bischl; Christian L. Müller (CoRR, 2021)

Systematic evaluation of cell-type deconvolution pipelines for sequencing-based bulk DNA methylomes. - Yunhee Jeong; Lisa Barros de Andrade e Sousa; Dominik Thalmeier; Reka Toth; Marlene Ganslmeier; Kersten Breuer; Christoph Plass; Pavlo Lutsik (Briefings Bioinform., 2022)

deepregression: A Flexible Neural Network Framework for Semi-Structured Deep Distributional Regression. - David Rügamer; Chris Kolb; Cornelius Fritz; Florian Pfisterer; Philipp Kopper; Bernd Bischl; Ruolin Shen; Christina Bukas; Lisa Barros de Andrade e Sousa; Dominik Thalmeier; Philipp F. M. Baumann; Lucas Kook; et al. (J. Stat. Softw., 2023)

Forest-Guided Clustering - Shedding Light into the Random Forest Black Box. - Lisa Barros de Andrade e Sousa; Gregor Miller; Ronan Le Gleut; Dominik Thalmeier; Helena Pelin; Marie Piraud (CoRR, 2025)