PDMDA: predicting deep-level miRNA-disease associations with graph neural networks and sequence features. - Cheng Yan; Guihua Duan; Na Li; Lishen Zhang; Fang-Xiang Wu; Jianxin Wang 001 (Bioinform., 2022)

Inferring disease-associated circRNAs by multi-source aggregation based on heterogeneous graph neural network. - Chengqian Lu; Lishen Zhang; Min Zeng; Wei Lan; Guihua Duan; Jianxin Wang 001 (Briefings Bioinform., 2023)

CRMSS: predicting circRNA-RBP binding sites based on multi-scale characterizing sequence and structure features. - Lishen Zhang; Chengqian Lu; Min Zeng; Yaohang Li; Jianxin Wang 001 (Briefings Bioinform., 2023)

RGCNPPIS: A Residual Graph Convolutional Network for Protein-Protein Interaction Site Prediction. - Jian Zhong; Haochen Zhao; Qichang Zhao; Ruikang Zhou; Lishen Zhang; Fei Guo 001; Jianxin Wang 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)

LymphAtlas- A Unified Multimodal Lymphoma Imaging Repository Delivering AI-Enhanced Diagnostic Insight. - Jiajun Ding; Beiyao Zhu; Xiaosheng Liu; Lishen Zhang; Zhao Liu (CoRR, 2025)