BarleyExpress: a web-based submission tool for enriched microarray database annotations. - Xiaoyun Tang; Lishuang Shen; Julie A. Dickerson (Bioinform., 2005)

BarleyBase - an expression profiling database for plant genomics. - Lishuang Shen; Jian Gong; Rico A. Caldo; Dan Nettleton; Dianne Cook; Roger P. Wise; Julie A. Dickerson (Nucleic Acids Res., 2005)

Phy-Mer: a novel alignment-free and reference-independent mitochondrial haplogroup classifier. - Daniel Navarro-Gomez; Jeremy Leipzig; Lishuang Shen; Marie T. Lott; Alphons P. M. Stassen; Douglas C. Wallace; Janey L. Wiggs; Marni J. Falk; Mannis van Oven; Xiaowu Gai (Bioinform., 2015)

HmtDB 2016: data update, a better performing query system and human mitochondrial DNA haplogroup predictor. - Rosanna Clima; Roberto Preste; Claudia Calabrese; Maria Angela Diroma; Mariangela Santorsola; Gaetano Scioscia; Domenico Simone; Lishuang Shen; Giuseppe Gasparre; Marcella Attimonelli (Nucleic Acids Res., 2017)