ABRA: improved coding indel detection via assembly-based realignment. - Lisle E. Mose; Matthew D. Wilkerson; D. Neil Hayes; Charles M. Perou; Joel S. Parker (Bioinform., 2014)

Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V'DJer. - Lisle E. Mose; Sara R. Selitsky; Lisa M. Bixby; David L. Marron; Michael D. Iglesia; Jonathan S. Serody; Charles M. Perou; Benjamin Vincent; Joel S. Parker (Bioinform., 2016)

Improved indel detection in DNA and RNA via realignment with ABRA2. - Lisle E. Mose; Charles M. Perou; Joel S. Parker (Bioinform., 2019)