A Preliminary Study on Normalizing AERS Drug Names Using RxNorm. - Liwei Wang 010; Guoqian Jiang; Wei Wang; Hongfang Liu (AMIA, 2012)

Coreference Resolution from Medical Corpus with Topic Modeling. - Dingcheng Li; Liwei Wang 010; Cui Tao; Christopher G. Chute; Hongfang Liu (AMIA, 2013)

Profiling adverse drug events of cancer drug ingredients using normalized AERS data. - Liwei Wang 010; Hongfang Liu (BIBM, 2013)

Standardized Drug and Pharmacological Class Network Construction. - Qian Zhu 003; Guoqian Jiang; Liwei Wang 010; Christopher G. Chute (VDOS+DO@ICBO, 2013)

Building a Knowledge Base of Severe Adverse Drug Events Based on AERS Reporting Data Using Semantic Web Technologies. - Guoqian Jiang; Liwei Wang 010; Hongfang Liu; Harold R. Solbrig; Christopher G. Chute (MedInfo, 2013)

Standardizing Drug Adverse Event Reporting Data. - Liwei Wang 010; Guoqian Jiang; Dingcheng Li; Hongfang Liu (MedInfo, 2013)

Cancer Based Pharmacogenomics Network for Drug Repurposing. - Liwei Wang 010; Hongfang Liu; Christopher G. Chute; Qian Zhu 003 (PAKDD Workshops, 2014)

Standardizing adverse drug event reporting data. - Liwei Wang 010; Guoqian Jiang; Dingcheng Li; Hongfang Liu (J. Biomed. Semant., 2014)

Cancer based pharmacogenomics network supported with scientific evidences: from the view of drug repurposing. - Liwei Wang 010; Hongfang Liu; Christopher G. Chute; Qian Zhu 003 (BioData Min., 2015)

Ontology-Based Analysis of Adverse Drug Reactions Associated with Anti-infection Drugs in China. - Mei Li; Yuying Cao; Liwei Wang 010; Hongfang Liu; Yongqun He (AMIA, 2016)

Discovering Associations between Problem List and Practice Setting. - Liwei Wang 010; Dingcheng Li; Majid Rastegar-Mojarad; Hongfang Liu (AMIA, 2016)

Answering patients' questions using expert-vetted online resources: A case study of diabetes. - Yuqun Zeng; Liwei Wang 010; Yanshan Wang; Dingcheng Li; Hongfang Liu (AMIA, 2016)

Prioritizing Adverse Drug Reaction and Drug Repositioning Candidates Generated by Literature-Based Discovery. - Majid Rastegar-Mojarad; Ravikumar Komandur Elayavilli; Liwei Wang 010; Rashmi Prasad; Hongfang Liu (BCB, 2016)

Answering diabetic patients' questions using expert-vetted online resources: A case study. - Yuqun Zeng; Xusheng Liu; Liwei Wang 010; Hongfang Liu; Yanshan Wang (BIBM, 2016)

LabLinker: Finding Links of Laboratory Test Results between Structured Records and Clinical Notes. - Sijia Liu 002; Vipin Chaudhary; Liwei Wang 010; Hongfang Liu (ICHI, 2016)

A Resource for Clinical Semantic Textual Similarity. - Naveed Afzal; Yanshan Wang; Feichen Shen; Liwei Wang 010; Hongfang Liu (AMIA, 2017)

Leveraging Collaborative Filtering to Accelerate Rare Disease Diagnosis. - Feichen Shen; Sijia Liu 002; Yanshan Wang; Liwei Wang 010; Naveed Afzal; Hongfang Liu (AMIA, 2017)

Accelerating Rare Disease Diagnosis with Collaborative Filtering. - Feichen Shen; Sijia Liu 002; Yanshan Wang; Liwei Wang 010; Naveed Afzal; Hongfang Liu (AMIA, 2017)

Semantic Representations of Medical Terms: A Comparison Study of Word Embeddings Trained on Clinical Notes and PubMed Articles. - Yanshan Wang; Naveed Afzal; Liwei Wang 010; Feichen Shen; Hongfang Liu (AMIA, 2017)

Recommending education materials for diabetic questions using information retrieval approaches. - Yuqun Zeng; Yanshan Wang; Feichen Shen; Sijia Liu 002; Liwei Wang 010; Majid Rastegar-Mojarad; Xusheng Liu; Hongfang Liu (AMIA, 2017)

Dependency and AMR Embeddings for Drug-Drug Interaction Extraction from Biomedical Literature. - Yanshan Wang; Sijia Liu 002; Majid Rastegar-Mojarad; Liwei Wang 010; Feichen Shen; Fei Liu 004; Hongfang Liu (BCB, 2017)

Correlating Lab Test Results in Clinical Notes with Structured Lab Data: A Case Study in HbA1c and Glucose. - Sijia Liu 002; Liwei Wang 010; Donna M. Ihrke; Vipin Chaudhary; Cui Tao; Chunhua Weng; Hongfang Liu (CRI, 2017)

Content Analysis of Free-Text Family History. - Yanshan Wang; Liwei Wang 010; Majid Rastegar-Mojarad; Sijia Liu 002; Feichen Shen; Hongfang Liu (CRI, 2017)

Phenotypic Analysis of Clinical Narratives Using Human Phenotype Ontology. - Feichen Shen; Liwei Wang 010; Hongfang Liu (MedInfo, 2017)

Using Human Phenotype Ontology for Phenotypic Analysis of Clinical Notes. - Feichen Shen; Liwei Wang 010; Hongfang Liu (MedInfo, 2017)

Need of informatics in designing interoperable clinical registries. - Majid Rastegar-Mojarad; Sunghwan Sohn; Liwei Wang 010; Feichen Shen; Troy C. Bleeker; William A. Cliby; Hongfang Liu (Int. J. Medical Informatics, 2017)

ARETA: A Corpus for Asthma Related Event Temporal Association. - Sijia Liu 002; Liwei Wang 010; Sunghwan Sohn; Liping Xia; Hongfang Liu (AMIA, 2018)

Information Extraction for Data Population in Lung Cancer Clinical Research. - Liwei Wang 010; Lei Luo; Yanshan Wang; Jason A. Wampfler; Ping Yang; Hongfang Liu (AMIA, 2018)

BioCreative/OHNLP Challenge 2018. - Majid Rastegar-Mojarad; Sijia Liu 002; Yanshan Wang; Naveed Afzal; Liwei Wang 010; Feichen Shen; Sunyang Fu; Hongfang Liu (BCB, 2018)

Leveraging Association Rule Mining to Detect Pathophysiological Mechanisms of Chronic Kidney Disease Complicated by Metabolic Syndrome. - Su-Yuan Peng; Yadan Fan; Liwei Wang 010; Andrew Wen; Xusheng Liu; Hongfang Liu; Feichen Shen (BIBM, 2018)

Constructing Node Embeddings for Human Phenotype Ontology to Assist Phenotypic Similarity Measurement. - Feichen Shen; Sijia Liu 002; Yanshan Wang; Liwei Wang 010; Andrew Wen; Andrew H. Limper; Hongfang Liu (ICHI Workshops, 2018)

Identification of Genetic Causality Statements in Medline Abstracts Leveraging Distant Supervision. - Liwei Wang 010; Majid Rastegar-Mojarad; Ravikumar Komandur Elayavilli; Yanshan Wang; Hongfang Liu (ICHI Workshops, 2018)

Predicting Practice Setting Using Topic Modeling. - Liwei Wang 010; Yanshan Wang; Feichen Shen; Majid Rastegar-Mojarad; Hongfang Liu (ICHI Workshops, 2018)

A Deep Representation Empowered Distant Supervision Paradigm for Clinical Information Extraction. - Yanshan Wang; Sunghwan Sohn; Sijia Liu 002; Feichen Shen; Liwei Wang 010; Elizabeth J. Atkinson; Shreyasee Amin; Hongfang Liu (CoRR, 2018)

A comparison of word embeddings for the biomedical natural language processing. - Yanshan Wang; Sijia Liu 002; Naveed Afzal; Majid Rastegar-Mojarad; Liwei Wang 010; Feichen Shen; Paul R. Kingsbury; Hongfang Liu (J. Biomed. Informatics, 2018)

Clinical information extraction applications: A literature review. - Yanshan Wang; Liwei Wang 010; Majid Rastegar-Mojarad; Sungrim Moon; Feichen Shen; Naveed Afzal; Sijia Liu 002; Yuqun Zeng; Saeed Mehrabi 003; Sunghwan Sohn; Hongfang Liu (J. Biomed. Informatics, 2018)

Association between Cardiotoxic Chemotherapy and Myocardial Infarction. - Liwei Wang 010; Suzette J. Bielinski; Paul A. Decker; Jill M. Killian; Nicholas B. Larson; Rui Zhang 028; Hongfang Liu (AMIA, 2019)

Achievability to Extract Specific Date Information for Cancer Research. - Liwei Wang 010; Jason A. Wampfler; Angela Dispenzieri; Hua Xu 001; Ping Yang; Hongfang Liu (AMIA, 2019)

Information Extraction for Populating Lung Cancer Clinical Research Data. - Liwei Wang 010; Lei Luo; Yanshan Wang; Jason A. Wampfler; Ping Yang; Hongfang Liu (ICHI, 2019)

Developing Customizable Cancer Information Extraction Modules for Pathology Reports Using CLAMP. - Ergin Soysal; Jeremy L. Warner; Jingqi Wang; Min Jiang 007; Krysten Harvey; Sandeep Kumar Jain; Xiao Dong; Hsing-yi Song; Harish Siddhanamatha; Liwei Wang 010; Qi Dai; Qingxia Chen; et al. (MedInfo, 2019)

CREATE: Cohort Retrieval Enhanced by Analysis of Text from Electronic Health Records using OMOP Common Data Model. - Sijia Liu 002; Yanshan Wang; Andrew Wen; Liwei Wang 010; Na Hong; Feichen Shen; Steven Bedrick; William R. Hersh; Hongfang Liu (CoRR, 2019)

Cross-lingual Data Transformation and Combination for Text Classification. - Jun Jiang; Shumao Pang; Xia Zhao; Liwei Wang 010; Andrew Wen; Hongfang Liu; Qianjin Feng (CoRR, 2019)

Development of Clinical Concept Extraction Applications: A Methodology Review. - Sunyang Fu; David Chen 003; Sijia Liu 002; Sungrim Moon; Kevin J. Peterson; Feichen Shen; Yanshan Wang; Liwei Wang 010; Andrew Wen; Yiqing Zhao; Sunghwan Sohn; Hongfang Liu (CoRR, 2019)

Ensembles of natural language processing systems for portable phenotyping solutions. - Cong Liu 020; Casey N. Ta; James R. Rogers; Ziran Li; Junghwan Lee; Alex M. Butler; Ning Shang; Fabricio Sampaio Peres Kury; Liwei Wang 010; Feichen Shen; Hongfang Liu; Lyudmila Ena; et al. (J. Biomed. Informatics, 2019)

HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology. - Feichen Shen; Suyuan Peng; Yadan Fan; Andrew Wen; Sijia Liu 002; Yanshan Wang; Liwei Wang 010; Hongfang Liu (J. Biomed. Informatics, 2019)

Rare disease knowledge enrichment through a data-driven approach. - Feichen Shen; Yiqing Zhao; Liwei Wang 010; Majid Rastegar-Mojarad; Yanshan Wang; Sijia Liu 002; Hongfang Liu (BMC Medical Informatics Decis. Mak., 2019)

Natural language processing for populating lung cancer clinical research data. - Liwei Wang 010; Lei Luo; Yanshan Wang; Jason A. Wampfler; Ping Yang; Hongfang Liu (BMC Medical Informatics Decis. Mak., 2019)

A clinical text classification paradigm using weak supervision and deep representation. - Yanshan Wang; Sunghwan Sohn; Sijia Liu 002; Feichen Shen; Liwei Wang 010; Elizabeth J. Atkinson; Shreyasee Amin; Hongfang Liu (BMC Medical Informatics Decis. Mak., 2019)

Discovering associations between problem list and practice setting. - Liwei Wang 010; Yanshan Wang; Feichen Shen; Majid Rastegar-Mojarad; Hongfang Liu (BMC Medical Informatics Decis. Mak., 2019)

Investigating the impact of disease and health record duration on the eMERGE algorithm for rheumatoid arthritis. - Vanessa L. Kronzer; Liwei Wang 010; Hongfang Liu; John M. Davis III; Jeffrey A. Sparks; Cynthia S. Crowson (J. Am. Medical Informatics Assoc., 2020)

Time event ontology (TEO): to support semantic representation and reasoning of complex temporal relations of clinical events. - Fang Li 011; Jingcheng Du; Yongqun He; Hsing-yi Song; Mohcine Madkour; Guozheng Rao; Yang Xiang 003; Yi Luo; Henry W. Chen; Sijia Liu 002; Liwei Wang 010; Hongfang Liu; et al. (J. Am. Medical Informatics Assoc., 2020)

Clinical concept extraction: A methodology review. - Sunyang Fu; David Chen 003; Huan He; Sijia Liu 002; Sungrim Moon; Kevin J. Peterson; Feichen Shen; Liwei Wang 010; Yanshan Wang; Andrew Wen; Yiqing Zhao; Sunghwan Sohn; et al. (J. Biomed. Informatics, 2020)

MedSTS: a resource for clinical semantic textual similarity. - Yanshan Wang; Naveed Afzal; Sunyang Fu; Liwei Wang 010; Feichen Shen; Majid Rastegar-Mojarad; Hongfang Liu (Lang. Resour. Evaluation, 2020)

Patient Asynchronous Response to Coronavirus Disease 2019 (COVID-19): A Retrospective Analysis of Patient Portal Messages. - Ming Huang 006; Aditya Khurana; George M. Mastorakos; Andrew Wen; Huan He; Liwei Wang 010; Sijia Liu 002; Yanshan Wang; Julie E. Prigge; Brian Costello; Nilay D. Shah; Henry Ting; et al. (AMIA, 2021)

COVID-19 Dashboard: Visual Exploration of the Regional Pandemic Trend. - Huan He; Liwei Wang 010; Andrew Wen; Ming Huang 006; Yanshan Wang; Hongfang Liu (AMIA, 2021)

Disparity analysis of patient portal messaging use for COVID-19 in urban versus rural locality. - Ming Huang 006; Andrew Wen; Huan He; Liwei Wang 010; Sijia Liu 002; Yanshan Wang; Nansu Zong; Yue Yu; Julie E. Prigge; Brian Costello; Nilay D. Shah; Henry Ting; et al. (AMIA, 2021)

Deep Learning Approaches for Breast Cancer Characteristics Extraction from Electronic Health Records. - Sicheng Zhou; Liwei Wang 010; Nan Wang; Sunyang Fu; Chetan Shenoy; Anne H. Blaes; Hongfang Liu; Rui Zhang 028 (AMIA, 2021)

CancerBERT: a BERT model for Extracting Breast Cancer Phenotypes from Electronic Health Records. - Sicheng Zhou; Liwei Wang 010; Nan Wang; Hongfang Liu; Rui Zhang 028 (CoRR, 2021)

An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C). - Sijia Liu 002; Andrew Wen; Liwei Wang 010; Huan He; Sunyang Fu; Robert T. Miller; Andrew E. Williams; Daniel R. Harris; Ramakanth Kavuluru; Mei Liu; Noor Abu-El-Rub; Rui Zhang 028; et al. (CoRR, 2021)

An aberration detection-based approach for sentinel syndromic surveillance of COVID-19 and other novel influenza-like illnesses. - Andrew Wen; Liwei Wang 010; Huan He; Sijia Liu 002; Sunyang Fu; Sunghwan Sohn; Jacob A. Kugel; Vinod C. Kaggal; Ming Huang 006; Yanshan Wang; Feichen Shen; Jungwei Fan 001; et al. (J. Biomed. Informatics, 2021)

Quality Assessment of Functional Status Documentation in EHR Across Institutions. - Sunyang Fu; Maria Vassilaki; Omar A. Ibrahim; Ronald C. Petersen; Jennifer St. Sauver; Liwei Wang 010; Jungwei Fan 001; Hongfang Liu; Sunghwan Sohn (AMIA, 2022)

Towards User-centered Corpus Development: Lessons Learnt from Designing and Developing MedTator. - Huan He; Sunyang Fu; Liwei Wang 010; Andrew Wen; Sijia Liu 002; Sungrim Moon; Kurt Miller; Hongfang Liu (AMIA, 2022)

MedTator: A Serverless Web-based Tool for Corpus Annotation. - Huan He; Sunyang Fu; Liwei Wang 010; Andrew Wen; Sijia Liu 002; Hongfang Liu (ICHI, 2022)

Evaluation of mCODE Coverage in EHR: a Scoping Review of Cancer Natural Language Processing. - Liwei Wang 010; Sunyang Fu; Andrew Wen; Xiaoyang Ruan; Huan He; Sijia Liu 002; Sungrim Moon; Michelle Mai; Irbaz Bin Riaz; Nan Wang; Ping Yang; Hua Xu 001; et al. (ICHI, 2022)

MedTator: a serverless annotation tool for corpus development. - Huan He; Sunyang Fu; Liwei Wang 010; Sijia Liu 002; Andrew Wen; Hongfang Liu (Bioinform., 2022)

A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology. - Yongqun He; Hong Yu 014; Anthony Huffman; Asiyah Yu Lin; Darren A. Natale; John Beverley; Ling Zheng; Yehoshua Perl; Zhigang Wang; Yingtong Liu; Edison Ong; Yang Wang; et al. (J. Biomed. Semant., 2022)

Discrimination, calibration, and point estimate accuracy of GRU-D-Weibull architecture for real-time individualized endpoint prediction. - Xiaoyang Ruan; Liwei Wang 010; Michelle Mai; Charat Thongprayoon; Wisit Cheungpasitporn; Hongfang Liu (CoRR, 2022)

Quality assessment of functional status documentation in EHRs across different healthcare institutions. - Sunyang Fu; Maria Vassilaki; Omar A. Ibrahim; Ronald C. Petersen; Sandeep R. Pagali; Jennifer St Sauver; Sungrim Moon; Liwei Wang 010; Jungwei Fan 001; Hongfang Liu; Sunghwan Sohn (Frontiers Digit. Health, 2022)

CancerBERT: a cancer domain-specific language model for extracting breast cancer phenotypes from electronic health records. - Sicheng Zhou; Nan Wang; Liwei Wang 010; Hongfang Liu; Rui Zhang 028 (J. Am. Medical Informatics Assoc., 2022)

Computational drug repurposing based on electronic health records: a scoping review. - Nansu Zong; Andrew Wen; Sungrim Moon; Sunyang Fu; Liwei Wang 010; Yiqing Zhao; Yue Yu; Ming Huang 006; Yanshan Wang; Gang Zheng; Michelle M. Mielke; James R. Cerhan; et al. (npj Digit. Medicine, 2022)

A Cross-institutional Evaluation on Breast Cancer Phenotyping NLP Algorithms on Electronic Health Records. - Sicheng Zhou; Nan Wang; Liwei Wang 010; Ju Sun; Anne H. Blaes; Hongfang Liu; Rui Zhang 028 (CoRR, 2023)

The IMPACT framework and implementation for accessible in silico clinical phenotyping in the digital era. - Andrew Wen; Huan He; Sunyang Fu; Sijia Liu 002; Kurt Miller; Liwei Wang 010; Kirk E. Roberts; Steven Bedrick; William R. Hersh; Hongfang Liu (npj Digit. Medicine, 2023)

An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C). - Sijia Liu 002; Andrew Wen; Liwei Wang 010; Huan He; Sunyang Fu; Robert T. Miller; Andrew E. Williams; Daniel R. Harris; Ramakanth Kavuluru; Mei Liu; Noor Abu-El-Rub; Dalton Schutte; et al. (J. Am. Medical Informatics Assoc., 2023)

GRU-D-Weibull: A novel real-time individualized endpoint prediction. - Xiaoyang Ruan; Liwei Wang 010; Charat Thongprayoon; Wisit Cheungpasitporn; Hongfang Liu (Artif. Intell. Medicine, 2023)

Wonder at Chemotimelines 2024: MedTimeline: An End-to-End NLP System for Timeline Extraction from Clinical Narratives. - Liwei Wang 010; Qiuhao Lu; Rui Li; Sunyang Fu; Hongfang Liu (ClinicalNLP@NAACL, 2024)

Deep Learning with Information Fusion and Model Interpretation for Health Monitoring of Fetus based on Long-term Prenatal Electronic Fetal Heart Rate Monitoring Data. - Zenghui Lin; Xintong Liu; Nan Wang; Ruichen Li; Qingao Liu; Jingying Ma; Liwei Wang 010; Yan Wang; Shenda Hong (CoRR, 2024)

Large Language Models Struggle in Token-Level Clinical Named Entity Recognition. - Qiuhao Lu; Rui Li; Andrew Wen; Jinlian Wang; Liwei Wang 010; Hongfang Liu (CoRR, 2024)

Explainable Diagnosis Prediction through Neuro-Symbolic Integration. - Qiuhao Lu; Rui Li; Elham Sagheb; Andrew Wen; Jinlian Wang; Liwei Wang 010; Jungwei W. Fan 001; Hongfang Liu (CoRR, 2024)

A taxonomy for advancing systematic error analysis in multi-site electronic health record-based clinical concept extraction. - Sunyang Fu; Liwei Wang 010; Huan He; Andrew Wen; Nansu Zong; Anamika Kumari; Feifan Liu; Sicheng Zhou; Rui Zhang 028; Chenyu Li; Yanshan Wang; Jennifer St Sauver; et al. (J. Am. Medical Informatics Assoc., 2024)

FedFSA: Hybrid and federated framework for functional status ascertainment across institutions. - Sunyang Fu; Heling Jia; Maria Vassilaki; Vipina Kuttichi Keloth; Yifang Dang; Yujia Zhou 003; Muskan Garg; Ronald C. Petersen; Jennifer St Sauver; Sungrim Moon; Liwei Wang 010; Andrew Wen; et al. (J. Biomed. Informatics, 2024)

A scoping review of OMOP CDM adoption for cancer research using real world data. - Liwei Wang 010; Andrew Wen; Sunyang Fu; Xiaoyang Ruan; Ming Huang 006; Rui Li; Qiuhao Lu; Heather Lyu; Andrew E. Williams; Hongfang Liu (npj Digit. Medicine, 2025)