Why neural networks should not be used for HIV-1 protease cleavage site prediction. - Thorsteinn S. Rögnvaldsson; Liwen You (Bioinform., 2004)

Almost Linear Biobasis Function Neural Networks. - Liwen You; Thorsteinn S. Rögnvaldsson (IJCNN, 2007)

Understanding Prediction Systems for HLA-Binding Peptides and T-Cell Epitope Identification. - Liwen You; Ping Zhang 008; Mikael Bodén; Vladimir Brusic (PRIB, 2007)

How to find simple and accurate rules for viral protease cleavage specificities. - Thorsteinn S. Rögnvaldsson; Terence A. Etchells; Liwen You; Daniel Garwicz; Ian H. Jarman; Paulo J. G. Lisboa (BMC Bioinform., 2009)

Using Gaussian Process with Test Rejection to Detect T-Cell Epitopes in Pathogen Genomes. - Liwen You; Vladimir Brusic; Marcus Gallagher; Mikael Bodén (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

State of the art prediction of HIV-1 protease cleavage sites. - Thorsteinn S. Rögnvaldsson; Liwen You; Daniel Garwicz (Bioinform., 2015)

Transformer-Based Bioacoustic Sound Event Detection on Few-Shot Learning Tasks. - Liwen You; Erika Pelaez Coyotl; Suren Gunturu; Maarten Van Segbroeck (ICASSP, 2023)

TaeBench: Improving Quality of Toxic Adversarial Examples. - Xuan Zhu; Dmitriy Bespalov; Liwen You; Ninad Kulkarni; Yanjun Qi (NAACL (Industry Track), 2025)