Phrase Structures, Non-Determinism and Backtracking. - Lloyd Allison (Inf. Process. Lett., 1978)

On nondeterministic control structures. - Lloyd Allison (ACM SIGPLAN Notices, 1978)

Generating Coset Representatives for Permutation Groups. - Lloyd Allison (J. Algorithms, 1981)

Programming Denotational Semantics. - Lloyd Allison (Comput. J., 1983)

Stable Marriages by Coroutines. - Lloyd Allison (Inf. Process. Lett., 1983)

Syntax Directed Program Editing. - Lloyd Allison (Softw. Pract. Exp., 1983)

Programming Denotational Semantics II. - Lloyd Allison (Comput. J., 1985)

A Bit-String Longest-Common-Subsequence Algorithm. - Lloyd Allison; Trevor I. Dix (Inf. Process. Lett., 1986)

Restriction site mapping is in separation theory. - Lloyd Allison; Chut N. Yee (Comput. Appl. Biosci., 1988)

Some Applications of Continuations. - Lloyd Allison (Comput. J., 1988)

Denotational Semantics of a Command Interpreter and Their Implementation in Standard ML. - C. McDonald; Lloyd Allison (Comput. J., 1989)

Direct Semantics and Exceptions Define Jumps and Coroutines. - Lloyd Allison (Inf. Process. Lett., 1989)

Circular Programs and Self-referential Structures. - Lloyd Allison (Softw. Pract. Exp., 1989)

Restriction site mapping for three or more enzymes. - S. T. Ho; Lloyd Allison; Chut N. Yee (Comput. Appl. Biosci., 1990)

Continuations Implement Generators and Streams. - Lloyd Allison (Comput. J., 1990)

Shortest Path and Closure Algorithms for Banded Matrices. - Lloyd Allison; Trevor I. Dix; Chut N. Yee (Inf. Process. Lett., 1991)

Lazy Dynamic-Programming Can Be Eager. - Lloyd Allison (Inf. Process. Lett., 1992)

Applications of Recursively Defined Data Structures. - Lloyd Allison (Aust. Comput. J., 1993)

Reconstruction of strings past. - Chut N. Yee; Lloyd Allison (Comput. Appl. Biosci., 1993)

A Correction to the Denotational Semantics for the Prolog of Nicholson and Foo. - Alan Finlay; Lloyd Allison (ACM Trans. Program. Lang. Syst., 1993)

Motifs in Biology: Analysis of Ambiguous Data: Introduction. - Toni Kazic; David J. States; Lloyd Allison (HICSS (5), 1994)

Using Hirschberg's Algorithm to Generate Random Alignments of Strings. - Lloyd Allison (Inf. Process. Lett., 1994)

Alignment of Low Information Sequences. - David R. Powell; Lloyd Allison; Trevor I. Dix; David L. Dowe (CATS, 1998)

Minimum Message Length Hidden Markov Modelling. - Timothy Edgoose; Lloyd Allison (Data Compression Conference, 1998)

Compression of Strings with Approximate Repeats. - Lloyd Allison; Timothy Edgoose; Trevor I. Dix (ISMB, 1998)

The Hunter and the Hunted - Modelling the Relationship Between Web Pages and Search Engines. - David L. Dowe; Lloyd Allison; Glen Pringle (PAKDD, 1998)

What is a Tall Poppy Among Web Pages? - Glen Pringle; Lloyd Allison; David L. Dowe (Comput. Networks, 1998)

Compression and Approximate Matching. - Lloyd Allison; David R. Powell; Trevor I. Dix (Comput. J., 1999)

A Versatile Divide and Conquer Technique for Optimal String Alignment. - David R. Powell; Lloyd Allison; Trevor I. Dix (Inf. Process. Lett., 1999)

MML Markov classification of sequential data. - Timothy Edgoose; Lloyd Allison (Stat. Comput., 1999)

Minimum Message Length Grouping of Ordered Data. - Leigh J. Fitzgibbon; Lloyd Allison; David L. Dowe (ALT, 2000)

Generator and Search Objects in Java. - Lloyd Allison (J. Res. Pract. Inf. Technol., 2000)

Intelligent Systems in Molecular Biology (ISMB98), 27 June - 1 July, 1998, Montreal. - Lloyd Allison (Comput. Chem., 2000)

Sequence Complexity for Biological Sequence Analysis. - Lloyd Allison; Linda Stern; Timothy Edgoose; Trevor I. Dix (Comput. Chem., 2000)

Univariate Polynomial Inference by Monte Carlo Message Length Approximation. - Leigh J. Fitzgibbon; David L. Dowe; Lloyd Allison (ICML, 2002)

Change-Point Estimation Using New Minimum Message Length Approximations. - Leigh J. Fitzgibbon; David L. Dowe; Lloyd Allison (PRICAI, 2002)

Types and Classes of Machine Learning and Data Mining. - Lloyd Allison (ACSC, 2003)

Flexible Decision Trees in a General Data-Mining Environment. - Joshua W. Comley; Lloyd Allison; Leigh J. Fitzgibbon (IDEAL, 2003)

Probability Model Type Sufficiency. - Leigh J. Fitzgibbon; Lloyd Allison; Joshua W. Comley (IDEAL, 2003)

Longest Biased Interval and Longest Non-negative Sum Interval. - Lloyd Allison (Bioinform., 2003)

Modelling-Alignment for Non-random Sequences. - David R. Powell; Lloyd Allison; Trevor I. Dix (Australian Conference on Artificial Intelligence, 2004)

Models for machine learning and data mining in functional programming. - Lloyd Allison (J. Funct. Program., 2005)

A programming paradigm for machine learning, with a case study of Bayesian networks. - Lloyd Allison (ACSC, 2006)

Learning Hybrid Bayesian Networks by MML. - Rodney T. O'Donnell; Lloyd Allison; Kevin B. Korb (Australian Conference on Artificial Intelligence, 2006)

A Simple Statistical Algorithm for Biological Sequence Compression. - Minh Duc Cao; Trevor I. Dix; Lloyd Allison; Chris Mears (DCC, 2007)

Comparative analysis of long DNA sequences by per element information content using different contexts. - Trevor I. Dix; David R. Powell; Lloyd Allison; Julie Bernal; Samira Jaeger; Linda Stern (BMC Bioinform., 2007)

Modelling Hepatitis B Virus Antiviral Therapy and Drug Resistant Mutant Strains. - Julie Bernal; Trevor I. Dix; Lloyd Allison; Angeline Bartholomeusz; Lilly Yuen (ACAL, 2009)

A Distance Measure for Genome Phylogenetic Analysis. - Minh Duc Cao; Lloyd Allison; Trevor I. Dix (Australasian Conference on Artificial Intelligence, 2009)

Computing Substitution Matrices for Genomic Comparative Analysis. - Minh Duc Cao; Trevor I. Dix; Lloyd Allison (PAKDD, 2009)

Design of an Efficient Out-of-Core Read Alignment Algorithm. - Arun Siddharth Konagurthu; Lloyd Allison; Thomas C. Conway; Bryan Beresford-Smith; Justin Zobel (WABI, 2010)

A genome alignment algorithm based on compression. - Minh Duc Cao; Trevor I. Dix; Lloyd Allison (BMC Bioinform., 2010)

MMLD Inference of Multilayer Perceptrons. - Enes Makalic; Lloyd Allison (Algorithmic Probability and Friends, 2011)

Piecewise linear approximation of protein structures using the principle of minimum message length. - Arun Siddharth Konagurthu; Lloyd Allison; Peter J. Stuckey; Arthur M. Lesk (Bioinform., 2011)

Minimum message length inference of secondary structure from protein coordinate data. - Arun Siddharth Konagurthu; Arthur M. Lesk; Lloyd Allison (Bioinform., 2012)

Statistical Inference of Protein "LEGO Bricks". - Arun Siddharth Konagurthu; Lloyd Allison; David Abramson 001; Peter J. Stuckey; Arthur M. Lesk (ICDM, 2013)

A Statistically Efficient and Scalable Method for Log-Linear Analysis of High-Dimensional Data. - François Petitjean; Lloyd Allison; Geoffrey I. Webb (ICDM, 2014)

A new statistical framework to assess structural alignment quality using information compression. - James H. Collier; Lloyd Allison; Arthur M. Lesk; Maria Garcia de la Banda; Arun Siddharth Konagurthu (Bioinform., 2014)

On Sufficient Statistics of Least-Squares Superposition of Vector Sets. - Arun Siddharth Konagurthu; Parthan Kasarapu; Lloyd Allison; James H. Collier; Arthur M. Lesk (J. Comput. Biol., 2015)

Minimum message length estimation of mixtures of multivariate Gaussian and von Mises-Fisher distributions. - Parthan Kasarapu; Lloyd Allison (Mach. Learn., 2015)

Statistical Compression of Protein Folding Patterns for Inference of Recurrent Substructural Themes. - Ramanan Subramanian; Lloyd Allison; Peter J. Stuckey; Maria Garcia de la Banda; David Abramson 001; Arthur M. Lesk; Arun Siddharth Konagurthu (DCC, 2017)

Statistical inference of protein structural alignments using information and compression. - James H. Collier; Lloyd Allison; Arthur M. Lesk; Peter J. Stuckey; Maria Garcia de la Banda; Arun Siddharth Konagurthu (Bioinform., 2017)

Coding Ockham's Razor - Lloyd Allison (Springer, 2018)

The Bits Between Proteins. - Dinithi Sumanaweera; Lloyd Allison; Arun Siddharth Konagurthu (DCC, 2018)

Statistical compression of protein sequences and inference of marginal probability landscapes over competing alignments using finite state models and Dirichlet priors. - Dinithi Sumanaweera; Lloyd Allison; Arun Siddharth Konagurthu (Bioinform., 2019)

The Complexity of Morality: Checking Markov Blanket Consistency with DAGs via Morality. - Yang Li 182; Kevin B. Korb; Lloyd Allison (CoRR, 2019)

Proving the NP-completeness of optimal moral graph triangulation. - Yang Li 182; Lloyd Allison; Kevin B. Korb (CoRR, 2019)

On Universal Codes for Integers: Wallace Tree, Elias Omega and Variations. - Lloyd Allison; Arun Siddharth Konagurthu; Daniel F. Schmidt (CoRR, 2019)

On the complexity of graphs (networks) by information content, and conditional (mutual) information given other graphs. - Lloyd Allison (CoRR, 2020)

On identifying statistical redundancy at the level of amino acid subsequences. - Sandun Rajapaksa; Dinithi Sumanaweera; Maria Garcia de la Banda; Peter J. Stuckey; David Abramson 001; Lloyd Allison; Arthur M. Lesk; Arun Siddharth Konagurthu (BIBM, 2021)

On Universal Codes for Integers: Wallace Tree, Elias Omega and Beyond. - Lloyd Allison; Arun Siddharth Konagurthu; Daniel F. Schmidt (DCC, 2021)

Markov Blanket Discovery using Minimum Message Length. - Yang Li 182; Kevin B. Korb; Lloyd Allison (CoRR, 2021)

Causal KL: Evaluating Causal Discovery. - Rodney T. O'Donnell; Kevin B. Korb; Lloyd Allison (CoRR, 2021)

The difficulty of being moral. - Yang Li 182; Lloyd Allison; Kevin B. Korb (Theor. Comput. Sci., 2021)

On the reliability and the limits of inference of amino acid sequence alignments. - Sandun Rajapaksa; Dinithi Sumanaweera; Arthur M. Lesk; Lloyd Allison; Peter J. Stuckey; Maria Garcia de la Banda; David Abramson 001; Arun Siddharth Konagurthu (Bioinform., 2022)

Bridging the gaps in statistical models of protein alignment. - Dinithi Sumanaweera; Lloyd Allison; Arun Siddharth Konagurthu (Bioinform., 2022)

Subclasses of Class Function used to Implement Transformations of Statistical Models. - Lloyd Allison (CoRR, 2022)

Getting 'ϕψχal' with proteins: minimum message length inference of joint distributions of backbone and sidechain dihedral angles. - Piyumi R. Amarasinghe; Lloyd Allison; Peter J. Stuckey; Maria Garcia de la Banda; Arthur M. Lesk; Arun Siddharth Konagurthu (Bioinform., 2023)

The divergence time of protein structures modelled by Markov matrices and its relation to the divergence of sequences. - Sandun Rajapaksa; Lloyd Allison; Peter J. Stuckey; Maria Garcia de la Banda; Arun Siddharth Konagurthu (CoRR, 2023)

Have Object-Oriented Languages Missed a Trick with Class Function and its Subclasses? - Lloyd Allison (CoRR, 2025)