Protein Interaction Prediction by Integrating Genomic Features and Protein Interaction Network Analysis. - Long J. Lu; Yu Xia 002; Haiyuan Yu; Alexander Rives; Haoxin Lu; Falk Schubert; Mark Gerstein (Data Analysis and Visualization in Genomics and Proteomics, 2005)

Hinge Atlas: relating protein sequence to sites of structural flexibility. - Samuel Flores; Long J. Lu; Julie Yang; Nicholas Carriero; Mark Gerstein (BMC Bioinform., 2007)

An Integrative Scoring Approach to Identify Transcriptional Regulations Controlling Lung Surfactant Homeostasis. - Minlu Zhang; Chunsheng Fang; Yan Xu; Raj Bhatnagar; Long J. Lu (ICDM Workshops, 2010)

Investigating the validity of current network analysis on static conglomerate networks by protein network stratification. - Minlu Zhang; Long J. Lu (BMC Bioinform., 2010)

Inferring Fuzzy Cognitive Map models for Gene Regulatory Networks from gene expression data. - Ye Chen; Lawrence J. Mazlack; Long J. Lu (BIBM, 2012)

Learning fuzzy cognitive maps from data by ant colony optimization. - Ye Chen; Lawrence J. Mazlack; Long J. Lu (GECCO, 2012)

Inferring causal networks using fuzzy cognitive maps and evolutionary algorithms with application to gene regulatory network reconstruction. - Ye Chen; Lawrence J. Mazlack; Ali A. Minai; Long J. Lu (Appl. Soft Comput., 2015)

Feature selection using multiple auto-encoders. - Xinyu Guo; Ali A. Minai; Long J. Lu (IJCNN, 2017)

A Computational Model for the Automatic Diagnosis of Attention Deficit Hyperactivity Disorder Based on Functional Brain Volume. - Lirong Tan; Xinyu Guo; Sheng Ren; Jeff Epstein; Long J. Lu (Frontiers Comput. Neurosci., 2017)