Assignment of ADT Modules to Processors. - Lonnie R. Welch (IPPS, 1992)

A Generic Systems Integration Framework for Large and Time-Critical Systems. - Wilhelm R. Rossak; Lonnie R. Welch; Tamar Zemel; Johann Eder (NATO ASI RTC, 1992)

The State-of-the-Art in Real-Time Computing. - Lonnie R. Welch (NATO ASI RTC, 1992)

Formal Methods and Algorithms for Parallel Real-Time Computing. - Lonnie R. Welch (NATO ASI RTC, 1992)

Techniques for Complex Systems Development. - Lonnie R. Welch (NATO ASI RTC, 1992)

Modeling Resource Contention Among Distributed Periodic Processes. - Lonnie R. Welch; Alexander D. Stoyenko; Thomas J. Marlowe (SPDP, 1992)

Cloning ADT Modules to Increase Parallelism: Rationale and Techniques. - Lonnie R. Welch (SPDP, 1993)

On Specification of Reusable Software Components. - Murali Sitaraman; Lonnie R. Welch; Douglas E. Harms (Int. J. Softw. Eng. Knowl. Eng., 1993)

Assignment and pre-run-time scheduling of object-based, parallel real-time processes. - Jack P. C. Verhoosel; Dieter K. Hammer; Erik J. Luit; Lonnie R. Welch (SPDP, 1994)

Program dependence analysis for concurrency exploitation in programs composed of abstract data type modules. - Guohui Yu; Lonnie R. Welch (SPDP, 1994)

Response time prediction in object-based, parallel embedded systems. - Alexander D. Stoyenko; Lonnie R. Welch; Bo-Chao Cheng (Microprocess. Microprogramming, 1994)

Schedulability-Analyzable Exception Handling for Fault-Tolerant Real-Time Languages. - Thomas J. Marlowe; Alexander D. Stoyenko; Stephen P. Masticola; Lonnie R. Welch (Real Time Syst., 1994)

A Parallel Virtual Machine for Programs Composed of Abstract Data Types. - Lonnie R. Welch (IEEE Trans. Computers, 1994)

Metrics and techniques for automatic partitioning and assignment of object-based concurrent programs. - Lonnie R. Welch; Binoy Ravindran; Jorge Henriques; Dieter K. Hammer (SPDP, 1995)

Metrics for Assessment of Designs and Implementations During Reengineering of Computer-Based Systems. - Lonnie R. Welch; Guohui Yu; Jack P. C. Verhoosel; J. A. Haney; Arthur L. Samuel; P. Ng (Ann. Softw. Eng., 1995)

A Novel Approach to Off-line Scheduling in Real-Time Systems. - Guohui Yu; Lonnie R. Welch (Informatica (Slovenia), 1995)

Reengineering computer-based systems for enhanced concurrency and layering. - Lonnie R. Welch; Antonio L. Samuel; Michael W. Masters; Robert D. Harrison; Mark Wilson 001; Joseph M. Caruso (J. Syst. Softw., 1995)

A Model for Scheduling of Object-Based, Distributed Real-Time Systems. - Jack P. C. Verhoosel; Dieter K. Hammer; Erik J. Luit; Lonnie R. Welch; Alexander D. Stoyenko (Real Time Syst., 1995)

Classifying Object-Oriented Real-time Systems: Ada 95 and Deal. - Dieter K. Hammer; Onno S. van Roosmalen; Lonnie R. Welch (ECBS, 1996)

Categorization of Programs Using Neural Networks. - Franz J. Kurfess; Lonnie R. Welch (ECBS, 1996)

Exploiting parallelism in high performance embedded system scheduling. - Binoy Ravindran; Lonnie R. Welch (HiPC, 1996)

Metrics for Quality and Concurrency in Object-Based Systems. - Lonnie R. Welch; Mrinalini Lankala; William H. Farr; Dieter K. Hammer (Ann. Softw. Eng., 1996)

Reverse Engineering of Computer-Based Control Systems. - Lonnie R. Welch; Guohui Yu; Binoy Ravindran; Franz J. Kurfess; Jorge Henriques; Mark Wilson 001; Antonio L. Samuel; Michael W. Masters (Int. J. Softw. Eng. Knowl. Eng., 1996)

Special Issue on Object-Oriented Real-Time Systems: Guest Editor's Introduction. - Dieter K. Hammer; Lonnie R. Welch (J. Parallel Distributed Comput., 1996)

Incorporating Temporal Considerations during Assignment and Pre-run-time Scheduling of Objects and Processes. - Jack P. C. Verhoosel; Lonnie R. Welch; Dieter K. Hammer; Erik J. Luit (J. Parallel Distributed Comput., 1996)

A taxonomy for distributed object-oriented real-time systems. - Dieter K. Hammer; Lonnie R. Welch; Onno S. van Roosmalen (OOPS Messenger, 1996)

A metrics-driven approach for utilizing concurrency in object-oriented real-time systems. - Lonnie R. Welch (OOPS Messenger, 1996)

Guest editor's introduction: ACM OOPS Messenger special issue on object-oriented real-time systems. - Lonnie R. Welch; Dieter K. Hammer (OOPS Messenger, 1996)

A toolset for the reengineering of complex computer systems. - Franz J. Kurfess; Mrinalini Lankala; Ashok Vantipalli; Lonnie R. Welch (ECBS, 1997)

Building Distributed Scalable Dependable Real-TimeSystems. - Binoy Ravindran; Lonnie R. Welch; Christian Kelling (ECBS, 1997)

A Resource Management Model for Dynamic, Scalable, Dependable, Real-Time Systems. - Binoy Ravindran; Lonnie R. Welch; Carl Bruggeman; Behrooz A. Shirazi; Charles Cavanaugh (IPPS/SPDP Workshops, 1998)

Specification and Modeling of Dynamic, Distributed Real-Time Systems. - Lonnie R. Welch; Binoy Ravindran; Behrooz A. Shirazi; Carl Bruggeman (RTSS, 1998)

Editorial. - Dieter K. Hammer; Heonshik Shin; Lonnie R. Welch (Real Time Syst., 1998)

Open Problems in the Distributed Control Systems Domain. - Lonnie R. Welch (Parallel Distributed Comput. Pract., 1998)

Engineering of Distributed Control Systems. - Lonnie R. Welch; Dieter K. Hammer (Parallel Distributed Comput. Pract., 1998)

DynBench: A Dynamic Benchmark Suite for Distributed Real-Time Systems. - Behrooz A. Shirazi; Lonnie R. Welch; Binoy Ravindran; Charles Cavanaugh; Barath Yanamula; Russ Brucks; Eui-nam Huh (IPPS/SPDP Workshops, 1999)

A Distributed System Reference Architecture for Adaptive QoS and Resource Management. - Lonnie R. Welch; Michael W. Masters; Leslie A. Madden; David T. Marlow; Philip M. Irey IV; Paul V. Werme; Behrooz A. Shirazi (IPPS/SPDP Workshops, 1999)

Distributed, Scalable, Dependable Real-Time Systems: Middleware Services and Applications. - Lonnie R. Welch; Binoy Ravindran; Paul V. Werme; Michael W. Masters; Behrooz A. Shirazi; Prashant A. Shirolkar; Robert D. Harrison; D. Wayne Mills; Tuy Do; Judy Lafratta; Shafqat Anwar; Steve Sharp; et al. (IPPS/SPDP, 1999)

A Dynamic Real-Time Benchmark for Assessment of QoS and Resource Management Technology. - Lonnie R. Welch; Behrooz A. Shirazi (IEEE Real Time Technology and Applications Symposium, 1999)

Adaptive QoS and Resource Management using a Posteriori Workload Characterizations. - Lonnie R. Welch; Paul V. Werme; Larry A. Fontenot; Michael W. Masters; Behrooz A. Shirazi; Binoy Ravindran; D. Wayne Mills (IEEE Real Time Technology and Applications Symposium, 1999)

Feedback control resource management using a posteriori workload characterizations. - David R. Alexander; Douglas Lawrence; Lonnie R. Welch (CDC, 2000)

Heterogeneous Resource Management for Dynamic Real-Time Systems. - Eui-nam Huh; Lonnie R. Welch; Behrooz A. Shirazi; Charles Cavanaugh (Heterogeneous Computing Workshop, 2000)

Workshop on Embedded/Distributed HPC Systems and Applications (EHPC 2000). - Devesh Bhatt; Lonnie R. Welch (IPDPS Workshops, 2000)

Quality of Service Negotiation for Distributed, Dynamic Real-Time Systems. - Charles Cavanaugh; Lonnie R. Welch; Behrooz A. Shirazi; Eui-nam Huh; Shafqat Anwar (IPDPS Workshops, 2000)

Accommodating QoS Prediction in an Adaptive Resource Management Framework. - Eui-nam Huh; Lonnie R. Welch; Behrooz A. Shirazi; Brett C. Tjaden; Charles Cavanaugh (IPDPS Workshops, 2000)

Network Load Monitoring in Distributed Systems. - Kazi M. Jahirul Islam; Behrooz A. Shirazi; Lonnie R. Welch; Brett C. Tjaden; Charles Cavanaugh; Shafqat Anwar (IPDPS Workshops, 2000)

Load balancing for dynamic real-time systems. - Lonnie R. Welch; Paul V. Werme; Behrooz A. Shirazi; Charles Cavanaugh; Larry A. Fontenot; Eui-nam Huh; Michael W. Masters (Clust. Comput., 2000)

DynBench: A Benchmark Suite for Dynamic Real-Time Systems. - Behrooz A. Shirazi; Lonnie R. Welch; Binoy Ravindran; Charles Cavanaugh; Eui-nam Huh (Parallel Distributed Comput. Pract., 2000)

Specification and Modeling of Network Resources in Dynamic, Distributed Real-time System. - Lu Tong; Carl Bruggeman; Brett C. Tjaden; Hong Chen; Lonnie R. Welch (PDCS, 2001)

Towards a Characterization of Quality of Service Management Approaches in Distributed, Real-time Systems. - Charles Cavanaugh; Lonnie R. Welch; Behrooz A. Shirazi (IPDPS, 2001)

A Dynamic, Real-Time Testbed for Resource Management Technology. - David M. Chelberg; Lonnie R. Welch; Cynthia R. Marling; Carl Bruggeman; Douglas Lawrence; David W. Matolak; Robert L. Williams II; Jae Y. Lew; Arvind Lakshmikumar; Matthew Gillen; Qiang Zhou; Barbara Pfarr (IPDPS, 2001)

Toward a Realization of the Value of Benefit in Real-Time Systems. - Lonnie R. Welch; Scott A. Brandt (IPDPS, 2001)

Important Considerations for Execution time Analysis of Dynamic, Periodic Processes. - Yongjun Zhou; Lonnie R. Welch; Eui-nam Huh; Charles T. Alexander; Douglas Lawrence; Shruti Mehta; Charles Cavanaugh (IPDPS, 2001)

Resource Management Middleware for Dynamic, Dependable Real-Time Systems. - Binoy Ravindran; Lonnie R. Welch; Behrooz A. Shirazi (Real Time Syst., 2001)

Challenges for Building Complex Real-time Computing Systems. - Michael W. Masters; Lonnie R. Welch (Parallel Distributed Comput. Pract., 2001)

Security for Mission Critical Real-Time Systems. - Brett C. Tjaden; Lonnie R. Welch (Parallel Distributed Comput. Pract., 2001)

Real-Time Performance Estimation for Dynamic, Distributed Real-Time Systems. - Eui-nam Huh; Lonnie R. Welch; Youngsong Mun (International Conference on Computational Science (3), 2002)

A Framework for Using Benefit Functions In Complex Real Time Systems. - David Andrews 001; Lonnie R. Welch; David M. Chelberg; Scott A. Brandt (IPDPS, 2002)

Monitoring Network QoS in a Dynamic Real-Time System. - Hong Chen; Brett C. Tjaden; Lonnie R. Welch; Carl Bruggeman; Lu Tong; Barbara Pfarr (IPDPS, 2002)

An Efficient Schedulability Analysis Policing Technique for Periodic, Dynamic Real-Time Applications. - Eui-nam Huh; Lonnie R. Welch; Barbara Pfarr (IPDPS, 2002)

Collaborative Problem Solving Agent for on Board Real-Time Systems. - Shikha Jain; Lonnie R. Welch; David M. Chelberg; Zhenyu Tan; David Fleeman; David Parrott; Barbara Pfarr; Mei C. Liu; Chris Shuler (IPDPS, 2002)

A Framework for using benefit functions in complex real-time systems. - David L. Andrews 001; Ravi Vemuri; David M. Chelberg; David Fleeman; David Parrott; Lonnie R. Welch; Scott A. Brandt (Parallel Distributed Comput. Pract., 2002)

Worst-Case Analysis for Real-Time Processes in Time-Sharing Environments. - Eui-nam Huh; Anbuselvan Neelamegam; Lonnie R. Welch; H. Park; Barbara Pfarr (Parallel Distributed Comput. Pract., 2002)

Management of Application QOS-level Adaptation for Real-Time Systems. - Shikha Jain; Lonnie R. Welch; Barbara Pfarr; David M. Chelberg; Carl Bruggeman; David Fleeman; David Parrott; Zhenyu Tan; M. McCoy; Chris Shuler (Parallel Distributed Comput. Pract., 2002)

An Optimization Framework for Dynamic, Distributed Real-Time Systems. - Klaus H. Ecker; David W. Juedes; Lonnie R. Welch; David M. Chelberg; Carl Bruggeman; Frank Drews; David Fleeman; David Parrott; Barbara Pfarr (IPDPS, 2003)

The Applicability of Social Models for Self-Organizing Real-Time Systems. - Dazhang Gu; Lonnie R. Welch; Carl Bruggeman; Robert Shelly (IPDPS, 2003)

An Approach for On-line Performance Certification. - Lonnie R. Welch (IPDPS, 2003)

A L2E-Based QoS Forecasting Algorithm for Dynamic, Distributed Real-Time Systems. - Lin Yang; Jundong Liu; Charles Cavanaugh; Lonnie R. Welch (PDPTA, 2003)

An Architecture and a General Optimization Framework for Resource Management in Dynamic, Distributed Real-Time Systems. - Frank Drews; Lonnie R. Welch (WORDS Fall, 2003)

Utility-Function Based Resource Allocation for Adaptable Applications in Dynamic, Distributed Real-Time Systems. - Frank Drews; David W. Juedes; David Fleeman; Andreas Brüning; Klaus H. Ecker; Martin Hoefer 001; Lonnie R. Welch (IPDPS, 2004)

Quality-Based Adaptive Resource Management Architecture (QARMA): A CORBA Resource Management Service. - David Fleeman; Matthew Gillen; Andrew Lenharth; M. Delaney; Lonnie R. Welch; David W. Juedes; Chang Liu (IPDPS, 2004)

Heuristic Resource Allocation Algorithms for Maximizing Allowable Workload in Dynamic, Distributed Real-Time Systems. - David W. Juedes; Frank Drews; Lonnie R. Welch; David Fleeman (IPDPS, 2004)

Agent-based computer vision in a dynamic, real-time environment. - Qiang Zhou; David Parrott; Matthew Gillen; David M. Chelberg; Lonnie R. Welch (Pattern Recognit., 2004)

QoS-based resource allocation in dynamic real-time systems. - Robert Judd; F. Drews; Douglas Lawrence; David Juedes; B. Leal; J. Deshpande; Lonnie R. Welch (ACC, 2005)

Toward System Certification of Real-Time Resource Management Middleware. - Zhenyu Tan; Lonnie R. Welch; William Leal; Michael W. Masters (ESA, 2005)

Robust Task Allocation for Dynamic Distributed Real-Time Systems Subject to Multiple Environmental Parameters. - Dazhang Gu; Frank Drews; Lonnie R. Welch (ICDCS, 2005)

A Predictive, Decentralized Load Balancing Approach. - Dazhang Gu; Lin Yang; Lonnie R. Welch (IPDPS, 2005)

Stable Allocations in Distributed Real-Time Systems with Multiple Environmental Parameters and Replicable Applications. - Hang Zhao; Dazhang Gu; Lonnie R. Welch; Frank Drews; David W. Juedes (IPDPS, 2005)

Integrated CORBA Scheduling and Resource Management for Distributed Real-Time Embedded Systems. - Kevin Bryan; Lisa Cingiser DiPippo; Victor Fay Wolfe; Matthew Murphy; Jiangyin Zhang; Douglas Niehaus; David Fleeman; David W. Juedes; Chang Liu; Lonnie R. Welch; Christopher D. Gill (IEEE Real-Time and Embedded Technology and Applications Symposium, 2005)

Approximation algorithm for periodic real-time tasks with workload-dependent running-time functions. - David W. Juedes; Frank Drews; Dazhang Gu; Lonnie R. Welch; Klaus H. Ecker; Silke Schomann (Real Time Syst., 2006)

Adaptive resource management for dynamic distributed real-time applications. - Eui-nam Huh; Lonnie R. Welch (J. Supercomput., 2006)

SiteSeeker - A Motif Discovery Tool. - Klaus H. Ecker; Lonnie R. Welch; Dazhang Gu (BIBE, 2007)

Guest Editor's introduction. - Charles Cavanaugh; Frank Drews; Lonnie R. Welch (J. Syst. Softw., 2007)

Characterizing robustness in dynamic real-time systems. - Dazhang Gu; Lonnie R. Welch; Frank Drews; Klaus Ecker (J. Syst. Softw., 2007)

Verification of instrumentation techniques for resource management of real-time systems. - Zhenyu Tan; William Leal; Lonnie R. Welch (J. Syst. Softw., 2007)

New Frontiers in Computational Genomics: Identification of Novel Functional Elements and Genome-scale Pattern Analysis. - Laura Elnitski; Lonnie R. Welch (Scalable Comput. Pract. Exp., 2007)

Application of bioinformatics and scalable computing to perform proteomic analysis of stomach tissue from diabetic mice. - Edward O. List; Darlene E. Berryman; Amanda J. Palmer; Elahu Gosney; Shigeru Okada; Bruce Kelder; Jens Lichtenberg; Lonnie R. Welch; John J. Kopchick (Scalable Comput. Pract. Exp., 2007)

Scalable Parallel Word Search in Multi-Core/Multiprocessor Systems. - Frank Drews; Eric Petri; Jens Lichtenberg; Lonnie R. Welch (BIOCOMP, 2008)

Word-Based Characterization of the Bidirectional Promoters from the Human DNA-Repair Pathway. - Jens Lichtenberg; Edwin Jacox; Mary Qu Yang; Laura Elnitski; Lonnie R. Welch (BIOCOMP, 2008)

Discovery of Regulatory Elements in Oomycete Orthologs. - Jens Lichtenberg; Paul Morris; Klaus Ecker; Lonnie R. Welch (BIOCOMP, 2008)

The SiteSeeker Motif Discovery Tool. - Klaus Ecker; Jens Lichtenberg; Lonnie R. Welch (Silico Biol., 2009)

A Concept for ab initio Prediction of cis-regulatory Modules. - Klaus H. Ecker; Lonnie R. Welch (Silico Biol., 2009)

Regulatory network nodes of check point factors in DNA repair pathways. - Laura Elnitski; Jens Lichtenberg; Lonnie R. Welch (BCB, 2010)

WordSeeker: concurrent bioinformatics software for discovering genome-wide patterns and word-based genomic signatures. - Jens Lichtenberg; Kyle Kurz; Xiaoyu Liang; Rami Al-ouran; Lev Neiman; Lee J. Nau; Joshua D. Welch; Edwin Jacox; Thomas Bitterman; Klaus Ecker; Laura Elnitski; Frank Drews; et al. (BMC Bioinform., 2010)

Scalable parallel word search in multicore/multiprocessor systems. - Frank Drews; Jens Lichtenberg; Lonnie R. Welch (J. Supercomput., 2010)

AGRIS: the Arabidopsis Gene Regulatory Information Server, an update. - Alper Yilmaz; Maria Katherine Mejia-Guerra; Kyle Kurz; Xiaoyu Liang; Lonnie R. Welch; Erich Grotewold (Nucleic Acids Res., 2011)

A Report of the Curriculum Task Force of the ISCB Education Committee. - Lonnie R. Welch; Russell Schwartz; Fran Lewitter (PLoS Comput. Biol., 2012)

The International Society of Computational Biology presents: the Great Lakes Bioinformatics Conference, May 16-18, 2014, Cincinnati, Ohio. - Jim Cavalcoli; Lonnie R. Welch; Bruce J. Aronow; Sorin Draghici; Daisuke Kihara (Bioinform., 2014)

Bioinformatics Curriculum Guidelines: Toward a Definition of Core Competencies. - Lonnie R. Welch; Fran Lewitter; Russell Schwartz; Catherine Brooksbank; Predrag Radivojac; Bruno A. Gaëta; Maria Victoria Schneider (PLoS Comput. Biol., 2014)

Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee). - Lonnie R. Welch; Cath Brooksbank; Russell Schwartz; Sarah L. Morgan; Bruno A. Gaëta; Alastair M. Kilpatrick; Daniel Mietchen; Benjamin L. Moore; Nicola J. Mulder; Mark A. Pauley; William R. Pearson; Predrag Radivojac; et al. (PLoS Comput. Biol., 2016)

Ten simple rules for forming a scientific professional society. - Bruno A. Gaëta; Javier De Las Rivas; Paul Horton; Pieter Meysman; Nicola J. Mulder; Paolo Romano 001; Lonnie R. Welch (PLoS Comput. Biol., 2017)

Art in Science Competition invites artworks to the annual exhibition on ISMB 2018 in Chicago. - Milana Frenkel-Morgenstern; Lonnie R. Welch; Bruno A. Gaëta; Diane E. Kovats (PLoS Comput. Biol., 2018)

The development and application of bioinformatics core competencies to improve bioinformatics training and education. - Nicola J. Mulder; Russell Schwartz; Michelle D. Brazas; Cath Brooksbank; Bruno A. Gaëta; Sarah L. Morgan; Mark A. Pauley; Anne G. Rosenwald; Gabriella Rustici; Michael L. Sierk; Tandy J. Warnow; Lonnie R. Welch (PLoS Comput. Biol., 2018)

Discovering Gene Regulatory Elements Using Coverage-Based Heuristics. - Rami Al-ouran; Robert Schmidt; Ashwini Naik; Jeffrey Jones; Frank Drews; David W. Juedes; Laura Elnitski; Lonnie R. Welch (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Set cover-based methods for motif selection. - Yichao Li; Yating Liu; David Juedes; Frank Drews; Razvan C. Bunescu; Lonnie R. Welch (Bioinform., 2020)

Ten simple rules for designing learning experiences that involve enhancing computational biology Wikipedia articles. - Alastair M. Kilpatrick; Audra Anjum; Lonnie R. Welch (PLoS Comput. Biol., 2020)

Characterizing domain-specific open educational resources by linking ISCB Communities of Special Interest to Wikipedia. - Alastair M. Kilpatrick; Farzana Rahman; Audra Anjum; Sayane Shome; K. M. Salim Andalib; Shrabonti Banik; Sanjana F. Chowdhury; Peter Coombe; Yesid Cuesta Astroz; J. Maxwell Douglas; Pradeep Eranti; Aleyna D. Kiran; et al. (Bioinform., 2022)

Closing the computational biology 'knowledge gap': Spanish Wikipedia as a case study. - Nelly Sélem-Mojica; Tülay Karakulak; Audra Anjum; Anton Pashkov; Rafael Pérez-Estrada; Karina Enriquez-Guillén; Dan F. DeBlasio; Sofia Ferreira-Gonzalez; Alejandra Medina-Rivera; Daniel Rodrigo-Torres; Alastair M. Kilpatrick; Lonnie R. Welch; et al. (Bioinform., 2024)