Segmentation of neuron and measurement of optically programed neurite growth: Fast automation via Bayesian thresholding. - Puneeth Reddy; Saurabh Shukla; Ajith Karunarathne; Soumya Jana; Lopamudra Giri (NER, 2015)

Integrated quantification based on confocal imaging: Cell crowding modulates heterogeneity in GPCR-mediated calcium oscillation. - Jophin G. Joseph; Sailaja Nanda; Sheetal Vennamalla; Govardhan Bhure; Ranjana Singh; Soumya Jana; Lopamudra Giri (EMBC, 2016)

Spatially resolved calcium spiking in hippocampal neurons: Estimation via confocal imaging and model-based simulation. - Sarpras Swain; Sathish Ande; Ravutla Suryateja; Soumya Jana; Lopamudra Giri (NER, 2017)

Smart Data Analytics approach to model Complex Biochemical Oscillations in Hippocampal Neurons. - Srinivas Soumitri Miriyala; Priyanka Devi Pantula; Lopamudra Giri; Kishalay Mitra (EMBC, 2018)

Confocal imaging of cytosolic Ca2+ and fuzzy clustering reveal the circuit topology details underlying synchronization in hippocampal neurons. - Sarpras Swain; Priyanka Devi Pantula; Kishalay Mitra; Lopamudra Giri (EMBC, 2018)

Effect of topology and time window on probability distribution underlying baclofen induced Ca2+ response in hippocampal neurons. - Abha Saxena; Vaibhav Dhyani; Gare Suman; Lopamudra Giri (EMBC, 2019)

Cell-to-Cell Variability in Protein Expression during Viral Infection: Monte-Carlo Simulation and Validation based on Confocal Imaging. - Abha Saxena; Vikas Upadhyay; Vaibhav Dhyani; Soumya Jana; Lopamudra Giri (EMBC, 2019)

Single Neuron Imaging Reveals Metabotropic Glutamate Receptor-Mediated Bursting and Delay in Calcium Oscillation in Hippocampal Neurons. - Ranjana Singh; Abha Saxena; Lopamudra Giri (EMBC, 2019)

Automatic Identification of Mixed Retinal Cells in Time-Lapse Fluorescent Microscopy Images using High-Dimensional DBSCAN. - Divya Spoorthy; Shanmukh Reddy Manne; Vaibhav Dhyani; Sarpras Swain; Shahna Shahulhameed; Siddhartha Mishra; Inderjeet Kaur; Lopamudra Giri; Soumya Jana (EMBC, 2019)

A model screening framework for the generation of Ca2+ oscillations in hippocampal neurons using differential evolution. - Vikas Upadhyay; Ravutla Surya Teja; Vaibhav Dhyani; Kevin George; Sarpras Swain; Kishalay Mitra; Lopamudra Giri (NER, 2019)

Detection of Specific Templates in Calcium Spiking in HeLa Cells Using Hierarchical DBSCAN: Clustering and Visualization of CellDrug Interaction at Multiple Doses. - Soumita Chel; Gare Suman; Lopamudra Giri (EMBC, 2020)

Confocal Imaging of Intercellular Calcium in HeLa Cells for Monitoring Drug-Response: Biophysical Framework for Visualization of the Time-Lapse Images. - Gare Suman; Abha Saxena; Lopamudra Giri (ISBI, 2020)

Application of kohonen-self organizing map to cluster drug induced Ca2+ response in hippocampal neurons at different drug dose. - Abha Saxena; Vaibhav Dhyani; Soumya Jana; Lopamudra Giri (NCC, 2020)

Synchronicity Identification in Hippocampal Neurons using Artificial Neural Network assisted Fuzzy C-means Clustering. - Priyanka Devi Pantula; Srinivas Soumitri Miriyala; Lopamudra Giri; Kishalay Mitra (SSCI, 2020)

Statistical Dependence between Neuronal Spike Train Pairs: Quantification based on Empirical Mutual Information Rate. - Sathish Ande; Srinivas Avasarala; Ajith Karunarathne; Lopamudra Giri; Soumya Jana (BHI, 2021)

Mathematical modeling of viral infection dynamics and immune response in SARS-CoV-2: A computational framework for testing drug efficacy. - Surbhi Sharma; Abha Saxena; Soumita Chel; Kishalay Mitra; Lopamudra Giri (EMBC, 2021)

Heterogeneity in Neuronal Calcium Spike Trains based on Empirical Distance. - Sathish Ande; Jayanth Reddy Regatti; Neha Pandey; Ajith Karunarathne; Lopamudra Giri; Soumya Jana (NER, 2021)

Gaussian Mixture Modeling of Single-Neuron Responses Obtained from Confocal-Calcium-Imaging of Dissociated Rat Hippocampal Neurons. - Vaibhav Dhyani; Soumya Jana; Lopamudra Giri (NER, 2021)

Analytics Pipeline for Visualization of Single Cell RNA Sequencing Data from Brochoaveolar Fluid in COVID-19 Patients: Assessment of Neuro Fuzzy-C-Means and HDBSCAN. - Gare Suman; Soumita Chel; Priyanka Devi Pantula; Abha Saxena; Kishalay Mitra; Rahuldeb Sarkar; Lopamudra Giri (EMBC, 2022)

In vitro laser scanning confocal microscopy and unsupervised segmentation: Quantification of cytosolic calcium and RNA distribution in hypoxic neurons. - Debasmita Saha; Vaibhav Dhyani; Lopamudra Giri (EMBC, 2023)

A deep learning approach for automation in neurite tracing and cell size estimation from differential contrast images under healthy and hypoxic condition. - Debasmita Saha; Shrirang Hadule; Lopamudra Giri (EMBC, 2023)

Computational Framework for in Silico Analysis of Neural Hyperactivity and Loss of Neural Activity in a Population of Interconnected Neurons. - Vaibhav Dhyani; KV Venkatesh; Lopamudra Giri (NER, 2023)

Microstate analysis of GABAB and mGluR Mediated Modulation of Calcium Spiking in Hippocampal Neurons. - Dipanjan Sehanobish; Vaibhav Dhyani; Suman Gare; Kishalay Mitra; Lopamudra Giri (NER, 2023)

Towards Fluorescent-Tag-Less Viral Titration: Automated Estimation of Cell-Size Distribution and Infection Level from Phase-Contrast Microscopy Using Deep Learning and Transfer Learning. - Jagadeesh Mahadevan; Nishant Bogoria; Satya Deepika Neelapala; Dhruv Srikanth; Soumya Jana; Kishalay Mitra; Lopamudra Giri (EMBC, 2024)

Improved Segmentation of Confocal Calcium Videos of Hela Cells Using Deep-Learning-Assisted Watershed Algorithm. - Satya Deepika Neelapala; Suman Gare; Vaibhav Dhyani; Dhruv Srikanth; Soumya Jana; Lopamudra Giri (EMBC, 2024)

U-Net-Based HeLa Cell Segmentation with Zero Manual Labeling Using DBSCAN-Generated Annotations. - Satya Deepika Neelapala; Soumya Jana; Lopamudra Giri (HealthCom, 2024)